RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 FLT1P17948 1338 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 SPDYE16A6NNV3 312 aaPredicted RBP14.51□□□□□ -0.09
CLK3-222ENST00000568232 VCAM1P19320 739 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 IGFBP4P22692 258 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 TFCP2Q12800 502 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 MVPQ14764 893 aaKnown RBP14.51□□□□□ -0.09
CLK3-222ENST00000568232 IL27Q8NEV9 243 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 ACER1Q8TDN7 264 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 NEUROD6Q96NK8 337 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 FEZ1Q99689 392 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 GINM1Q9NU53 330 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 PHF24Q9UPV7 400 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 CHD7Q9P2D1 2997 aa14.51□□□□□ -0.09
CLK3-222ENST00000568232 UBTFL1P0CB47 393 aaPredicted RBP14.5□□□□□ -0.09
CLK3-222ENST00000568232 FAAP100Q0VG06 881 aa14.5□□□□□ -0.09
CLK3-222ENST00000568232 LBX2Q6XYB7 198 aa14.5□□□□□ -0.09
CLK3-222ENST00000568232 CCDC129Q6ZRS4 1044 aa14.5□□□□□ -0.09
CLK3-222ENST00000568232 NOL10Q9BSC4 688 aaKnown RBP14.5□□□□□ -0.09
CLK3-222ENST00000568232 C1QTNF1Q9BXJ1 281 aa14.5□□□□□ -0.09
CLK3-222ENST00000568232 MOV10L1Q9BXT6 1211 aaKnown RBP14.5□□□□□ -0.09
CLK3-222ENST00000568232 COPRSQ9NQ92 184 aa14.5□□□□□ -0.09
CLK3-222ENST00000568232 LRP2BPQ9P2M1 347 aa14.5□□□□□ -0.09
CLK3-222ENST00000568232 PGK1P00558 417 aa14.49□□□□□ -0.09
CLK3-222ENST00000568232 RAB3GAP1Q15042 981 aa14.49□□□□□ -0.09
CLK3-222ENST00000568232 C16orf59Q7L2K0 433 aa14.49□□□□□ -0.09
CLK3-222ENST00000568232 ADGRA1Q86SQ6 560 aa14.49□□□□□ -0.09
CLK3-222ENST00000568232 RPAP3Q9H6T3 665 aaPredicted RBP14.49□□□□□ -0.09
CLK3-222ENST00000568232 SYNGAP1Q96PV0 1343 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 A0A1W2PQ45 241 aaPredicted RBP14.48□□□□□ -0.09
CLK3-222ENST00000568232 A0A1W2PQY0 241 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 BMP1P13497 986 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 ERCC3P19447 782 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 MCAMP43121 646 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 TFF2Q03403 129 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 SLC44A5Q8NCS7 719 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 SSH1Q8WYL5 1049 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 LRFN3Q9BTN0 628 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 KIAA1683Q9H0B3 1180 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 EPHX3Q9H6B9 360 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 XPNPEP3Q9NQH7 507 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 AKAP2Q9Y2D5 859 aa14.48□□□□□ -0.09
CLK3-222ENST00000568232 STRNO43815 780 aa14.47□□□□□ -0.09
CLK3-222ENST00000568232 BAG3O95817 575 aa14.47□□□□□ -0.09
CLK3-222ENST00000568232 USP14P54578 494 aa14.47□□□□□ -0.09
CLK3-222ENST00000568232 GORABQ5T7V8 394 aa14.47□□□□□ -0.09
CLK3-222ENST00000568232 NAA16Q6N069 864 aaPredicted RBP14.47□□□□□ -0.09
CLK3-222ENST00000568232 LENG1Q96BZ8 264 aaPredicted RBP14.47□□□□□ -0.09
CLK3-222ENST00000568232 SNRKQ9NRH2 765 aa14.47□□□□□ -0.09
CLK3-222ENST00000568232 TIMP1P01033 207 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 HLA-DOAP06340 250 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 RARBP10826 455 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 TAL1P17542 331 aaPredicted RBP14.46□□□□□ -0.09
CLK3-222ENST00000568232 ARID4AP29374 1257 aaPredicted RBP14.46□□□□□ -0.09
CLK3-222ENST00000568232 KCNQ1P51787 676 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 PPP4CP60510 307 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 DYNLL1P63167 89 aaKnown RBP14.46□□□□□ -0.09
CLK3-222ENST00000568232 TMEM240Q5SV17 173 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 TATDN1Q6P1N9 297 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 ANKRD33Q7Z3H0 272 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 RNF180Q86T96 592 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 MAML3Q96JK9 1138 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 SPATC1LQ9H0A9 340 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 HCN4Q9Y3Q4 1203 aa14.46□□□□□ -0.09
CLK3-222ENST00000568232 ACRP10323 421 aa14.45□□□□□ -0.1
CLK3-222ENST00000568232 PLCG2P16885 1265 aa14.45□□□□□ -0.1
CLK3-222ENST00000568232 RASIP1Q5U651 963 aa14.45□□□□□ -0.1
CLK3-222ENST00000568232 MICALL1Q8N3F8 863 aa14.45□□□□□ -0.1
CLK3-222ENST00000568232 NKX2-4Q9H2Z4 354 aa14.45□□□□□ -0.1
CLK3-222ENST00000568232 CXXC1Q9P0U4 656 aaPredicted RBP14.45□□□□□ -0.1
CLK3-222ENST00000568232 DCDC2CA8MYV0 355 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 CSF2RAP15509 400 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 PLS1Q14651 629 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 COG2Q14746 738 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 ABCB5Q2M3G0 1257 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 MFSD5Q6N075 450 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 ZNF365Q70YC5 407 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 NCAPG2Q86XI2 1143 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 TOX2Q96NM4 488 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 MRS2Q9HD23 443 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 SLC5A4Q9NY91 659 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 TBX21Q9UL17 535 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 ARIH1Q9Y4X5 557 aaPredicted RBP14.44□□□□□ -0.1
CLK3-222ENST00000568232 PLXNA1Q9UIW2 1896 aa14.44□□□□□ -0.1
CLK3-222ENST00000568232 ZNF236Q9UL36 1845 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 GUCY1A2P33402 732 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 CERKLQ49MI3 558 aaPredicted RBP14.43□□□□□ -0.1
CLK3-222ENST00000568232 ATF7IPQ6VMQ6 1270 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 ZNF579Q8NAF0 562 aaKnown RBP14.43□□□□□ -0.1
CLK3-222ENST00000568232 SHCBP1Q8NEM2 672 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 CDCA7LQ96GN5 454 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 STARD7Q9NQZ5 370 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 HOXC10Q9NYD6 342 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 MSRAQ9UJ68 235 aa14.43□□□□□ -0.1
CLK3-222ENST00000568232 YBX2Q9Y2T7 364 aaKnown RBP14.43□□□□□ -0.1
CLK3-222ENST00000568232 TCF20Q9UGU0 1960 aaKnown RBP14.43□□□□□ -0.1
CLK3-222ENST00000568232 A0A1W2PRG0 241 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 ADAMTS4O75173 837 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 PGK2P07205 417 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 ACLYP53396 1101 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 PPIGQ13427 754 aaKnown RBP eCLIP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms