RNA–Protein interactions for RNA: ENST00000566095.6

SF3B3-207, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 453 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-207ENST00000566095 IFNAR1P17181 557 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 CCT2P78371 535 aaKnown RBP11.4□□□□□ -0.58
SF3B3-207ENST00000566095 MAP3K9P80192 1104 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 SCRN1Q12765 414 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 GRM4Q14833 912 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 SEPT2Q15019 361 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 CSPP1Q1MSJ5 1256 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 ANKRD13AQ8IZ07 590 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 RBM46Q8TBY0 533 aaKnown RBP11.4□□□□□ -0.58
SF3B3-207ENST00000566095 LPAR1Q92633 364 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 TNPO1Q92973 898 aaKnown RBP11.4□□□□□ -0.58
SF3B3-207ENST00000566095 CDCA5Q96FF9 252 aa11.4□□□□□ -0.58
SF3B3-207ENST00000566095 GPBP1L1Q9HC44 474 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-207ENST00000566095 SIPA1L1O43166 1804 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 PTPDC1A2A3K4 754 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 FAM196BA6NMK8 535 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 PHF20L1A8MW92 1017 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 H3BQV1 296 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 hCG_1984214I3L0E3 225 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 STX6O43752 255 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 RAD21O60216 631 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 NMT2O60551 498 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 DEXIO95424 95 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 EEF2P13639 858 aaKnown RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 SLC1A4P43007 532 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 EVX2Q03828 476 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 TROAPQ12815 778 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 CCDC96Q2M329 555 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 ZNF713Q8N859 430 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 NECAB1Q8N987 351 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 CCDC12Q8WUD4 166 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 KLRG1Q96E93 195 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 GMCL1Q96IK5 515 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 LARP6Q9BRS8 491 aaKnown RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 RNF26Q9BY78 433 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 ZSCAN16Q9H4T2 348 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 SEC63Q9UGP8 760 aaKnown RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 PNMA2Q9UL42 364 aa11.39□□□□□ -0.59
SF3B3-207ENST00000566095 ISY1Q9ULR0 285 aaKnown RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 GREB1LQ9C091 1923 aaPredicted RBP11.39□□□□□ -0.59
SF3B3-207ENST00000566095 C19orf81C9J6K1 198 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 USP17L10C9JJH3 530 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 ADM5C9JUS6 153 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 SMIM22K7EJ46 135 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 LARGE1O95461 756 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 FMNL1O95466 1100 aaPredicted RBP11.38□□□□□ -0.59
SF3B3-207ENST00000566095 ZSCAN22P10073 491 aaPredicted RBP11.38□□□□□ -0.59
SF3B3-207ENST00000566095 SYT1P21579 422 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 GJB2P29033 226 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 MAP3K11Q16584 847 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 SLFN13Q68D06 897 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 CHADLQ6NUI6 762 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 C2orf69Q8N8R5 385 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 TMEM87AQ8NBN3 555 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 NSUN7Q8NE18 718 aaKnown RBP11.38□□□□□ -0.59
SF3B3-207ENST00000566095 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.38□□□□□ -0.595e-6■□□□□ 10.2
SF3B3-207ENST00000566095 CHURC1Q8WUH1 139 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 WDR18Q9BV38 432 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.38□□□□□ -0.59
SF3B3-207ENST00000566095 BRMS1Q9HCU9 246 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 GPHNQ9NQX3 736 aaPredicted RBP11.38□□□□□ -0.59
SF3B3-207ENST00000566095 TMOD4Q9NZQ9 345 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 ORC3Q9UBD5 711 aaPredicted RBP11.38□□□□□ -0.59
SF3B3-207ENST00000566095 HPS5Q9UPZ3 1129 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 TMX2Q9Y320 296 aa11.38□□□□□ -0.59
SF3B3-207ENST00000566095 POTECB2RU33 542 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 PDHBP11177 359 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 IKQ13123 557 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-207ENST00000566095 SAFBQ15424 915 aaKnown RBP eCLIP11.37□□□□□ -0.59
SF3B3-207ENST00000566095 LARP1BQ659C4 914 aaKnown RBP11.37□□□□□ -0.59
SF3B3-207ENST00000566095 USP17L2Q6R6M4 530 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 TMTC3Q6ZXV5 915 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 FAM160B2Q86V87 743 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 CCDC144CPQ8IYA2 1237 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 LRRC47Q8N1G4 583 aaKnown RBP11.37□□□□□ -0.59
SF3B3-207ENST00000566095 SPRYD3Q8NCJ5 442 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 RRP36Q96EU6 259 aaKnown RBP11.37□□□□□ -0.59
SF3B3-207ENST00000566095 MYL10Q9BUA6 226 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 SPZ1Q9BXG8 430 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 GLIS2Q9BZE0 524 aaPredicted RBP11.37□□□□□ -0.59
SF3B3-207ENST00000566095 KIAA1683Q9H0B3 1180 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 VCPKMTQ9H867 229 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 DOCK1Q14185 1865 aa11.37□□□□□ -0.59
SF3B3-207ENST00000566095 PALM3A6NDB9 673 aaPredicted RBP11.36□□□□□ -0.59
SF3B3-207ENST00000566095 KLRF2D3W0D1 207 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 WDR46O15213 610 aaKnown RBP11.36□□□□□ -0.59
SF3B3-207ENST00000566095 PRPF3O43395 683 aaKnown RBP11.36□□□□□ -0.59
SF3B3-207ENST00000566095 BAG4O95429 457 aaKnown RBP11.36□□□□□ -0.59
SF3B3-207ENST00000566095 SNHG28P0DPA3 235 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 FDX1P10109 184 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 BMP3P12645 472 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 PTPRAP18433 802 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 GUCY1A2P33402 732 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 PPATQ06203 517 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 ZNF543Q08ER8 600 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 ST3GAL1Q11201 340 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 ERO1BQ86YB8 467 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 TEX2Q8IWB9 1127 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 ZNF280CQ8ND82 737 aa11.36□□□□□ -0.59
SF3B3-207ENST00000566095 CCDC148Q8NFR7 591 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms