RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 LACTBP83111 547 aaPredicted RBP11.71□□□□□ -0.53
CLN3-220ENST00000566040 SP3Q02447 781 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 AKNAD1Q5T1N1 836 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 OTUD7BQ6GQQ9 843 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 LBX2Q6XYB7 198 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 CATSPERGQ6ZRH7 1159 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 MAP4K1Q92918 833 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 MKL1Q969V6 931 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 PARK7Q99497 189 aaKnown RBP11.71□□□□□ -0.53
CLN3-220ENST00000566040 RPAP3Q9H6T3 665 aaPredicted RBP11.71□□□□□ -0.53
CLN3-220ENST00000566040 KANSL2Q9H9L4 492 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 CABP5Q9NP86 173 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 FBXO28Q9NVF7 368 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 MORF4L1Q9UBU8 362 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 TFAP4Q01664 338 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 CTU1Q7Z7A3 348 aaKnown RBP11.7□□□□□ -0.54
CLN3-220ENST00000566040 AMOTL1Q8IY63 956 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 SPICE1Q8N0Z3 855 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 LRRC47Q8N1G4 583 aaKnown RBP11.7□□□□□ -0.54
CLN3-220ENST00000566040 REPS2Q8NFH8 660 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 NUP88Q99567 741 aaPredicted RBP11.7□□□□□ -0.54
CLN3-220ENST00000566040 FEZ1Q99689 392 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 MKNK2Q9HBH9 465 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 BTBD7Q9P203 1132 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 MCM3APO60318 1980 aa11.7□□□□□ -0.54
CLN3-220ENST00000566040 MKI67P46013 3256 aaKnown RBP11.7□□□□□ -0.54
CLN3-220ENST00000566040 NDUFB10O96000 172 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 MFAP1P55081 439 aaKnown RBP11.69□□□□□ -0.54
CLN3-220ENST00000566040 ANTXR2P58335 489 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 PDE4BQ07343 736 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 FAM110CQ1W6H9 321 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 Q3C1V9 767 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 CYB5R4Q7L1T6 521 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 ANKRD13CQ8N6S4 541 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 PORCNQ9H237 461 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 ADAMTS5Q9UNA0 930 aa11.69□□□□□ -0.54
CLN3-220ENST00000566040 RBM8AQ9Y5S9 174 aaKnown RBP11.69□□□□□ -0.54
CLN3-220ENST00000566040 B4E1Z4 1266 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 WDR46O15213 610 aaKnown RBP11.68□□□□□ -0.54
CLN3-220ENST00000566040 USP14P54578 494 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 NECTIN1Q15223 517 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 GMCL1P1Q8NEA9 526 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 SENP2Q9HC62 589 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 ARHGEF10LQ9HCE6 1279 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 TCP11L1Q9NUJ3 509 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 TMOD4Q9NZQ9 345 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 CLIP2Q9UDT6 1046 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 GABRQQ9UN88 632 aa11.68□□□□□ -0.54
CLN3-220ENST00000566040 USP17L15C9J2P7 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L13C9JLJ4 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L11C9JVI0 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L18D6R9N7 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L22D6RA61 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L17D6RBQ6 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L19D6RCP7 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L20D6RJB6 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 F5H6K3 240 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 CDC45O75419 566 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 ECM2O94769 699 aaPredicted RBP11.67□□□□□ -0.54
CLN3-220ENST00000566040 TSPY3P0CV98 308 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 TSPY8P0CW00 308 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 OSBPP22059 807 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 KLRC3Q07444 240 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 USP17L24Q0WX57 530 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 SEC23AQ15436 765 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 FAM83BQ5T0W9 1011 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 TNS4Q8IZW8 715 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 ZNF444Q8N0Y2 327 aaPredicted RBP11.67□□□□□ -0.54
CLN3-220ENST00000566040 LPAR1Q92633 364 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 ATG4CQ96DT6 458 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 ERO1AQ96HE7 468 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 ABHD8Q96I13 439 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 SYNPO2Q9UMS6 1093 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 PTPN22Q9Y2R2 807 aa11.67□□□□□ -0.54
CLN3-220ENST00000566040 KIAA0100Q14667 2235 aaKnown RBP11.67□□□□□ -0.54
CLN3-220ENST00000566040 BAZ2BQ9UIF8 2168 aaKnown RBP11.67□□□□□ -0.54
CLN3-220ENST00000566040 ALPK3Q96L96 1907 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 ZNF213O14771 459 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 RANBP6O60518 1105 aaKnown RBP11.66□□□□□ -0.54
CLN3-220ENST00000566040 KDM4AO75164 1064 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 TTLL1O95922 423 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 IGHA2P01877 340 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 SNHG28P0DPA3 235 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 DSG3P32926 999 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 GCLCP48506 637 aaPredicted RBP11.66□□□□□ -0.54
CLN3-220ENST00000566040 ERVK-9P63128 1117 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 ERVK-24P63145 666 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 ATP2B2Q01814 1243 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 SLC35G1Q2M3R5 365 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 RRP12Q5JTH9 1297 aaKnown RBP11.66□□□□□ -0.54
CLN3-220ENST00000566040 MB21D2Q8IYB1 491 aaPredicted RBP11.66□□□□□ -0.54
CLN3-220ENST00000566040 RASEFQ8IZ41 740 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 ENAHQ8N8S7 591 aaPredicted RBP11.66□□□□□ -0.54
CLN3-220ENST00000566040 RUFY2Q8WXA3 655 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 USP6NLQ92738 828 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 TMEM47Q9BQJ4 181 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 ZKSCAN3Q9BRR0 538 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 ZSWIM5Q9P217 1185 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 GJD2Q9UKL4 321 aa11.66□□□□□ -0.54
CLN3-220ENST00000566040 PNMA3Q9UL41 463 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms