RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 U2AF1L4Q8WU68 220 aaKnown RBP24.8■■□□□ 1.56
CLN3-219ENST00000565778 TFRCP02786 760 aaKnown RBP24.79■■□□□ 1.56
CLN3-219ENST00000565778 HMGCRP04035 888 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 EEF2P13639 858 aaKnown RBP24.79■■□□□ 1.56
CLN3-219ENST00000565778 KIAA1755Q5JYT7 1200 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 LBX2Q6XYB7 198 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 IFNL3Q8IZI9 196 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 SPICE1Q8N0Z3 855 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 SOCS4Q8WXH5 440 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 LPAR1Q92633 364 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 SHISA4Q96DD7 197 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 NACAP1Q9BZK3 213 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 BTBD7Q9P203 1132 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 STAP2Q9UGK3 403 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 SALL3Q9BXA9 1300 aa24.79■■□□□ 1.56
CLN3-219ENST00000565778 DOCK3Q8IZD9 2030 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 SPDYE16A6NNV3 312 aaPredicted RBP24.78■■□□□ 1.56
CLN3-219ENST00000565778 PDE1AP54750 535 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 ZMYM1Q5SVZ6 1142 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 EXOC6Q8TAG9 804 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 DEFB118Q96PH6 123 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 VCPKMTQ9H867 229 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 EPB41L4AQ9HCS5 686 aaPredicted RBP24.78■■□□□ 1.56
CLN3-219ENST00000565778 PDE4DIPQ5VU43 2346 aa24.78■■□□□ 1.56
CLN3-219ENST00000565778 XRCC5P13010 732 aaKnown RBP24.77■■□□□ 1.56
CLN3-219ENST00000565778 B4GALNT3Q6L9W6 998 aa24.77■■□□□ 1.56
CLN3-219ENST00000565778 ZNF444Q8N0Y2 327 aaPredicted RBP24.77■■□□□ 1.56
CLN3-219ENST00000565778 EVI5LQ96CN4 794 aa24.77■■□□□ 1.56
CLN3-219ENST00000565778 BRCA2P51587 3418 aa24.77■■□□□ 1.56
CLN3-219ENST00000565778 RAD21O60216 631 aa24.76■■□□□ 1.55
CLN3-219ENST00000565778 RGS2P41220 211 aa24.76■■□□□ 1.55
CLN3-219ENST00000565778 TRIM32Q13049 653 aa24.76■■□□□ 1.55
CLN3-219ENST00000565778 SAMD1Q6SPF0 538 aaPredicted RBP24.76■■□□□ 1.55
CLN3-219ENST00000565778 TRIB2Q92519 343 aa24.76■■□□□ 1.55
CLN3-219ENST00000565778 LNPKQ9C0E8 428 aa24.76■■□□□ 1.55
CLN3-219ENST00000565778 ZNF287Q9HBT7 754 aa24.76■■□□□ 1.55
CLN3-219ENST00000565778 HMX1Q9NP08 348 aaPredicted RBP24.76■■□□□ 1.55
CLN3-219ENST00000565778 FLOT1O75955 427 aa24.75■■□□□ 1.55
CLN3-219ENST00000565778 RASA1P20936 1047 aa24.75■■□□□ 1.55
CLN3-219ENST00000565778 MORN1Q5T089 497 aa24.75■■□□□ 1.55
CLN3-219ENST00000565778 TRMT44Q8IYL2 757 aaKnown RBP24.75■■□□□ 1.55
CLN3-219ENST00000565778 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.75■■□□□ 1.55
CLN3-219ENST00000565778 PAK6Q9NQU5 681 aaPredicted RBP24.75■■□□□ 1.55
CLN3-219ENST00000565778 SUPT16HQ9Y5B9 1047 aaKnown RBP24.75■■□□□ 1.55
CLN3-219ENST00000565778 IVNS1ABPQ9Y6Y0 642 aa24.75■■□□□ 1.55
CLN3-219ENST00000565778 MKI67P46013 3256 aaKnown RBP24.74■■□□□ 1.55
CLN3-219ENST00000565778 IGHDP01880 384 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 CAPN2P17655 700 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 DSG3P32926 999 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 USP6NLQ92738 828 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.74■■□□□ 1.55
CLN3-219ENST00000565778 NAPBQ9H115 298 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 GOPCQ9HD26 462 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 RPTORQ8N122 1335 aa24.74■■□□□ 1.55
CLN3-219ENST00000565778 WDR46O15213 610 aaKnown RBP24.73■■□□□ 1.55
CLN3-219ENST00000565778 PTPREP23469 700 aa24.73■■□□□ 1.55
CLN3-219ENST00000565778 MAP2K5Q13163 448 aa24.73■■□□□ 1.55
CLN3-219ENST00000565778 DPF3Q92784 378 aa24.73■■□□□ 1.55
CLN3-219ENST00000565778 SLC15A5A6NIM6 579 aa24.72■■□□□ 1.55
CLN3-219ENST00000565778 PRDM1O75626 825 aa24.72■■□□□ 1.55
CLN3-219ENST00000565778 SLC3A2P08195 630 aaKnown RBP24.72■■□□□ 1.55
CLN3-219ENST00000565778 ZKSCAN1P17029 563 aaPredicted RBP24.72■■□□□ 1.55
CLN3-219ENST00000565778 PLS1Q14651 629 aa24.72■■□□□ 1.55
CLN3-219ENST00000565778 CCDC129Q6ZRS4 1044 aa24.72■■□□□ 1.55
CLN3-219ENST00000565778 SMC5Q8IY18 1101 aa24.72■■□□□ 1.55
CLN3-219ENST00000565778 MB21D1Q8N884 522 aa24.72■■□□□ 1.55
CLN3-219ENST00000565778 FARP2O94887 1054 aaPredicted RBP24.71■■□□□ 1.55
CLN3-219ENST00000565778 PDE4BQ07343 736 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 CCL14Q16627 93 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 ATG4CQ96DT6 458 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 APBA2Q99767 749 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 MOV10L1Q9BXT6 1211 aaKnown RBP24.71■■□□□ 1.55
CLN3-219ENST00000565778 SPATC1LQ9H0A9 340 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 NYAP2Q9P242 653 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 CLIP2Q9UDT6 1046 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 MYH8P13535 1937 aa24.71■■□□□ 1.55
CLN3-219ENST00000565778 ROBO3Q96MS0 1386 aa24.7■■□□□ 1.55
CLN3-219ENST00000565778 TRIM6-TRIM34B2RNG4 842 aa24.7■■□□□ 1.54
CLN3-219ENST00000565778 PRKAR2AP13861 404 aaKnown RBP24.7■■□□□ 1.54
CLN3-219ENST00000565778 CHD1LQ86WJ1 897 aa24.7■■□□□ 1.54
CLN3-219ENST00000565778 HTATIP2Q9BUP3 242 aa24.7■■□□□ 1.54
CLN3-219ENST00000565778 CRISPLD2Q9H0B8 497 aa24.7■■□□□ 1.54
CLN3-219ENST00000565778 PPARAQ07869 468 aa24.69■■□□□ 1.54
CLN3-219ENST00000565778 CACNB2Q08289 660 aaPredicted RBP24.69■■□□□ 1.54
CLN3-219ENST00000565778 UBE2Q1Q7Z7E8 422 aa24.69■■□□□ 1.54
CLN3-219ENST00000565778 RILPL2Q969X0 211 aa24.69■■□□□ 1.54
CLN3-219ENST00000565778 HELLSQ9NRZ9 838 aa24.69■■□□□ 1.54
CLN3-219ENST00000565778 STRNO43815 780 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 ERCC3P19447 782 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 FAM83BQ5T0W9 1011 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 MAP3K21Q5TCX8 1036 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 DPP9Q86TI2 863 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 NCAPG2Q86XI2 1143 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 FBXO28Q9NVF7 368 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 PLXNB2O15031 1838 aa24.68■■□□□ 1.54
CLN3-219ENST00000565778 F5H6K3 240 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 TSPY3P0CV98 308 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 TSPY8P0CW00 308 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 NUCB1Q02818 461 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 KLRC3Q07444 240 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms