RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PRR33A8MZF0 331 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 RBM10P98175 930 aaKnown RBP6.97□□□□□ -1.29
VPS35-205ENST00000563984 IKZF1Q13422 519 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 MLECQ14165 292 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 LDLRAD1Q5T700 205 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 SLFN12Q8IYM2 578 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 ZNF296Q8WUU4 475 aaPredicted RBP6.97□□□□□ -1.29
VPS35-205ENST00000563984 BACH2Q9BYV9 841 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 FAM53CQ9NYF3 392 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 CEP131Q9UPN4 1083 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 POLR3KQ9Y2Y1 108 aaPredicted RBP6.97□□□□□ -1.29
VPS35-205ENST00000563984 CAPN6Q9Y6Q1 641 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 PITPNM2Q9BZ72 1349 aa6.97□□□□□ -1.29
VPS35-205ENST00000563984 UPK3BL1B0FP48 263 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 UPK3BL2E5RIL1 263 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 HTR3BO95264 441 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 ANKLE2Q86XL3 938 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 DNAJB8Q8NHS0 232 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 FBXO27Q8NI29 283 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 METTL5Q9NRN9 209 aaKnown RBP6.96□□□□□ -1.3
VPS35-205ENST00000563984 SEMA3GQ9NS98 782 aa6.96□□□□□ -1.3
VPS35-205ENST00000563984 GRIN3BO60391 1043 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 CBX7O95931 251 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 KRT1P04264 644 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 VAMP1P23763 118 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 ZNF76P36508 570 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 ZP2Q05996 745 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 CDKAL1Q5VV42 579 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 SLC23A3Q6PIS1 610 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 THAP5Q7Z6K1 395 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 ZSWIM9Q86XI8 627 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 PIWIL2Q8TC59 973 aaKnown RBP6.95□□□□□ -1.3
VPS35-205ENST00000563984 HSPA12BQ96MM6 686 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 PPP1R16BQ96T49 567 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 ADAMTS1Q9UHI8 967 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 ST14Q9Y5Y6 855 aa6.95□□□□□ -1.3
VPS35-205ENST00000563984 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.94□□□□□ -1.3
VPS35-205ENST00000563984 TLR3O15455 904 aaKnown RBP6.94□□□□□ -1.3
VPS35-205ENST00000563984 PTMSP20962 102 aa6.94□□□□□ -1.3
VPS35-205ENST00000563984 IRX6P78412 446 aaPredicted RBP6.94□□□□□ -1.3
VPS35-205ENST00000563984 AMIGO3Q86WK7 504 aa6.94□□□□□ -1.3
VPS35-205ENST00000563984 FLAD1Q8NFF5 587 aa6.94□□□□□ -1.3
VPS35-205ENST00000563984 PPP1R13LQ8WUF5 828 aa6.94□□□□□ -1.3
VPS35-205ENST00000563984 CCDC74BQ96LY2 380 aa6.94□□□□□ -1.3
VPS35-205ENST00000563984 CHURC1-FNTBB4DL54 471 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 ATE1O95260 518 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 INHBBP09529 407 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 SETQ01105 290 aaPredicted RBP6.93□□□□□ -1.3
VPS35-205ENST00000563984 TNK2Q07912 1038 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 NT5C1AQ9BXI3 368 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 BRMS1Q9HCU9 246 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 KLHL3Q9UH77 587 aa6.93□□□□□ -1.3
VPS35-205ENST00000563984 H3BS24 57 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 C1QTNF9P0C862 333 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 CRKP46108 304 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 CTSWP56202 376 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 FANCCQ00597 558 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 SYDE1Q6ZW31 735 aaPredicted RBP6.92□□□□□ -1.3
VPS35-205ENST00000563984 REXO1Q8N1G1 1221 aaKnown RBP6.92□□□□□ -1.3
VPS35-205ENST00000563984 LIN37Q96GY3 246 aaPredicted RBP6.92□□□□□ -1.3
VPS35-205ENST00000563984 EHMT1Q9H9B1 1298 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 KCNH3Q9ULD8 1083 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 PCDHB14Q9Y5E9 798 aa6.92□□□□□ -1.3
VPS35-205ENST00000563984 ARID4BQ4LE39 1312 aaPredicted RBP6.92□□□□□ -1.3
VPS35-205ENST00000563984 SLC22A31A6NKX4 558 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 TNNI2P48788 182 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 APOBRQ0VD83 1088 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 KCNMB1Q16558 191 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 SLITRK4Q8IW52 837 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 PHACTR4Q8IZ21 702 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 RNF141Q8WVD5 230 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 NKD1Q969G9 470 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 RNF34Q969K3 372 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 UBE2FQ969M7 185 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 C20orf173Q96LM9 149 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 Q96M66 194 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 PLCD4Q9BRC7 762 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 SPON2Q9BUD6 331 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 CARS2Q9HA77 564 aaKnown RBP6.91□□□□□ -1.3
VPS35-205ENST00000563984 ATP13A1Q9HD20 1204 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 UBP1Q9NZI7 540 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 GMIPQ9P107 970 aa6.91□□□□□ -1.3
VPS35-205ENST00000563984 RGS13O14921 159 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 DNAJA2O60884 412 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 ZNF165P49910 485 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 SEZ6Q53EL9 994 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 TMPRSS7Q7RTY8 843 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 USP48Q86UV5 1035 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 CERS3Q8IU89 383 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 KIAA0825Q8IV33 1275 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 TRIT1Q9H3H1 467 aaKnown RBP6.9□□□□□ -1.3
VPS35-205ENST00000563984 ZSWIM5Q9P217 1185 aa6.9□□□□□ -1.3
VPS35-205ENST00000563984 SCAMP3O14828 347 aaKnown RBP6.89□□□□□ -1.31
VPS35-205ENST00000563984 GBP1P32455 592 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 ARSHQ5FYA8 562 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 FYB2Q5VWT5 728 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 TEX2Q8IWB9 1127 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 DTWD2Q8NBA8 298 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 BAHD1Q8TBE0 780 aaPredicted RBP6.89□□□□□ -1.31
VPS35-205ENST00000563984 EAF1Q96JC9 268 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms