RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 HMGCS2P54868 508 aa13.84□□□□□ -0.19
HDGFL3-204ENST00000563790 IRX3P78415 501 aaPredicted RBP13.84□□□□□ -0.19
HDGFL3-204ENST00000563790 CCDC84Q86UT8 332 aaPredicted RBP13.84□□□□□ -0.19
HDGFL3-204ENST00000563790 JARID2Q92833 1246 aaPredicted RBP13.84□□□□□ -0.19
HDGFL3-204ENST00000563790 STARD7Q9NQZ5 370 aa13.84□□□□□ -0.19
HDGFL3-204ENST00000563790 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.84□□□□□ -0.19
HDGFL3-204ENST00000563790 HECTD1Q9ULT8 2610 aa13.83□□□□□ -0.19
HDGFL3-204ENST00000563790 WDFY3Q8IZQ1 3526 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 ADRB1P08588 477 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 TCP10Q12799 353 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 SMAD2Q15796 467 aaKnown RBP13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 RSPO4Q2I0M5 234 aaPredicted RBP13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 OLFML2BQ68BL8 750 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 SPRED2Q7Z698 418 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 CCDC191Q8NCU4 936 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 POLR3GLQ9BT43 218 aa13.83□□□□□ -0.2
HDGFL3-204ENST00000563790 CYSRT1A8MQ03 144 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 ZBBXA8MT70 800 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 PTPREP23469 700 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 HOXA7P31268 230 aaPredicted RBP13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 CDK7P50613 346 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 MAP3K10Q02779 954 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 DMWDQ09019 674 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 SPP2Q13103 211 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 CWC22Q9HCG8 908 aaKnown RBP13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 XPNPEP3Q9NQH7 507 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 SPTA1P02549 2419 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 PIEZO2Q9H5I5 2752 aa13.82□□□□□ -0.2
HDGFL3-204ENST00000563790 GRB14Q14449 540 aa13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 SH3D19Q5HYK7 790 aa13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 NUP133Q8WUM0 1156 aa13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 MPHOSPH8Q99549 860 aa13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 TSEN34Q9BSV6 310 aaKnown RBP13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 KNSTRNQ9Y448 316 aa13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 LRRFIP2Q9Y608 721 aaKnown RBP13.81□□□□□ -0.2
HDGFL3-204ENST00000563790 TAF5LO75529 589 aa13.8□□□□□ -0.2
HDGFL3-204ENST00000563790 COL19A1Q14993 1142 aa13.8□□□□□ -0.2
HDGFL3-204ENST00000563790 ZNF280CQ8ND82 737 aa13.8□□□□□ -0.2
HDGFL3-204ENST00000563790 VWCEQ96DN2 955 aa13.8□□□□□ -0.2
HDGFL3-204ENST00000563790 CHPF2Q9P2E5 772 aa13.8□□□□□ -0.2
HDGFL3-204ENST00000563790 ANKRD17O75179 2603 aaKnown RBP13.8□□□□□ -0.2
HDGFL3-204ENST00000563790 PGK1P00558 417 aa13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 ACLYP53396 1101 aa13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 RPUSD2Q8IZ73 545 aaKnown RBP13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 GTF3C2Q8WUA4 911 aaPredicted RBP13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 PABPC5Q96DU9 382 aaKnown RBP13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 SLC9A7Q96T83 725 aa13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 SUGCTQ9HAC7 445 aa13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 CWC25Q9NXE8 425 aaPredicted RBP13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 NDUFB9Q9Y6M9 179 aa13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 COL4A3Q01955 1670 aa13.79□□□□□ -0.2
HDGFL3-204ENST00000563790 MYH2Q9UKX2 1941 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 RARBP10826 455 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 NFIAQ12857 509 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 COL9A3Q14050 684 aaPredicted RBP13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 FAM126BQ8IXS8 530 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 PHOSPHO2Q8TCD6 241 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 PAGR1Q9BTK6 254 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 TBC1D2Q9BYX2 928 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 FAM198AQ9UFP1 575 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 TNKSO95271 1327 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 NLRC5Q86WI3 1866 aa13.78□□□□□ -0.2
HDGFL3-204ENST00000563790 ELP1O95163 1332 aa13.77□□□□□ -0.21
HDGFL3-204ENST00000563790 HHIPL2Q6UWX4 724 aa13.77□□□□□ -0.21
HDGFL3-204ENST00000563790 ROBO3Q96MS0 1386 aa13.77□□□□□ -0.21
HDGFL3-204ENST00000563790 SEMA4AQ9H3S1 761 aa13.77□□□□□ -0.21
HDGFL3-204ENST00000563790 TSPYL4Q9UJ04 414 aa13.77□□□□□ -0.21
HDGFL3-204ENST00000563790 UMODL1Q5DID0 1318 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 MOXD2PA6NHM9 499 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 KIF28PB7ZC32 967 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 LMNAP02545 664 aaKnown RBP13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 SDHBP21912 280 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 ATXN1P54253 815 aaKnown RBP13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 CCNA1P78396 465 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 TTLL4Q14679 1199 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 PRAMEF19Q5SWL8 479 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 IVNS1ABPQ9Y6Y0 642 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 TEX15Q9BXT5 2789 aa13.76□□□□□ -0.21
HDGFL3-204ENST00000563790 MAST3O60307 1309 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 A0A1B0GUL7 405 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 TLR3O15455 904 aaKnown RBP13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 CD4P01730 458 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 ITGA6P23229 1130 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 HERC6Q8IVU3 1022 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 ZFPM1Q8IX07 1006 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 TBC1D22AQ8WUA7 517 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 HIPK3Q9H422 1215 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 TANC1Q9C0D5 1861 aa13.75□□□□□ -0.21
HDGFL3-204ENST00000563790 TRIP12Q14669 1992 aaPredicted RBP13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 STXBP3O00186 592 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 MBTPS2O43462 519 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 ADAMTS4O75173 837 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 PDGFBP01127 241 aaPredicted RBP13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 WDR78Q5VTH9 848 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 TMEM105Q8N8V8 129 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 KCNG4Q8TDN1 519 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 MYD88Q99836 296 aa13.74□□□□□ -0.21
HDGFL3-204ENST00000563790 ARVCFO00192 962 aa13.73□□□□□ -0.21
HDGFL3-204ENST00000563790 PFKMP08237 780 aa13.73□□□□□ -0.21
HDGFL3-204ENST00000563790 CCL23P55773 120 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms