RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 STK11IPQ8N1F8 1099 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 RGS22Q8NE09 1264 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 TGFBRAP1Q8WUH2 860 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 IDI2Q9BXS1 227 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 ZSCAN16Q9H4T2 348 aaPredicted RBP10.41□□□□□ -0.74
VPS39-207ENST00000563692 INCENPQ9NQS7 918 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 BRPF3Q9ULD4 1205 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 MTMR6Q9Y217 621 aa10.41□□□□□ -0.74
VPS39-207ENST00000563692 MYO5AQ9Y4I1 1855 aaKnown RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 PTPDC1A2A3K4 754 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 TESPA1A2RU30 521 aaPredicted RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 IGF2BP3O00425 579 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS39-207ENST00000563692 PRPF40AO75400 957 aaKnown RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 RCAN1P53805 252 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 PPIL2Q13356 520 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 PICALMQ13492 652 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 GSE1Q14687 1217 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 ARHGEF6Q15052 776 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 C12orf60Q5U649 245 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 ZNF444Q8N0Y2 327 aaPredicted RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 NSUN7Q8NE18 718 aaKnown RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 CNKSR2Q8WXI2 1034 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 ZKSCAN4Q969J2 545 aaPredicted RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 DDX11Q96FC9 970 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 ERO1AQ96HE7 468 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 ZSCAN10Q96SZ4 725 aaPredicted RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 LY9Q9HBG7 655 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 MKNK2Q9HBH9 465 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 ZFYVE28Q9HCC9 887 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 GPHNQ9NQX3 736 aaPredicted RBP10.4□□□□□ -0.74
VPS39-207ENST00000563692 PICK1Q9NRD5 415 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 FAM198AQ9UFP1 575 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 SNCAIPQ9Y6H5 919 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 MYH13Q9UKX3 1938 aa10.4□□□□□ -0.74
VPS39-207ENST00000563692 JAK2O60674 1132 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 CALM1P0DP23 149 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 CALM2P0DP24 149 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 CALM3P0DP25 149 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 PPATQ06203 517 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 CRHR2Q13324 411 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 TAF1CQ15572 869 aaPredicted RBP10.39□□□□□ -0.75
VPS39-207ENST00000563692 APOA5Q6Q788 366 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 CATIPQ7Z7H3 387 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 TTC6Q86TZ1 520 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 WASF1Q92558 559 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 MS4A4AQ96JQ5 239 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 NCOA5Q9HCD5 579 aaKnown RBP10.39□□□□□ -0.75
VPS39-207ENST00000563692 HPS5Q9UPZ3 1129 aa10.39□□□□□ -0.75
VPS39-207ENST00000563692 DDX49Q9Y6V7 483 aaKnown RBP10.39□□□□□ -0.75
VPS39-207ENST00000563692 CYP2D7A0A087X1C5 515 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 TSPY2A6NKD2 308 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 GOLGA8AA7E2F4 631 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 IRF6O14896 467 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 CTDNEP1O95476 244 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 INPP5BP32019 993 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 IFIT1BQ5T764 474 aaKnown RBP10.38□□□□□ -0.75
VPS39-207ENST00000563692 FBXO46Q6PJ61 603 aaPredicted RBP10.38□□□□□ -0.75
VPS39-207ENST00000563692 MAPKAPK5Q8IW41 473 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 BRI3BPQ8WY22 251 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 PTPN18Q99952 460 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 ZKSCAN3Q9BRR0 538 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 ZCCHC17Q9NP64 241 aaKnown RBP10.38□□□□□ -0.75
VPS39-207ENST00000563692 LMBRD1Q9NUN5 540 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 ORC3Q9UBD5 711 aaPredicted RBP10.38□□□□□ -0.75
VPS39-207ENST00000563692 ZNF112Q9UJU3 913 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS39-207ENST00000563692 TRIM17Q9Y577 477 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 TACC3Q9Y6A5 838 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 MAST2Q6P0Q8 1798 aa10.38□□□□□ -0.75
VPS39-207ENST00000563692 TNKSO95271 1327 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 NPM3O75607 178 aaKnown RBP10.37□□□□□ -0.75
VPS39-207ENST00000563692 PRDM1O75626 825 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 MBD3O95983 291 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 ADD1P35611 737 aaKnown RBP10.37□□□□□ -0.75
VPS39-207ENST00000563692 RHBDL3P58872 404 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 KRT85P78386 507 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 TFAP4Q01664 338 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 SP3Q02447 781 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 SSRP1Q08945 709 aaKnown RBP10.37□□□□□ -0.75
VPS39-207ENST00000563692 TRIM29Q14134 588 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 RTN1Q16799 776 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 KLHL40Q2TBA0 621 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 NOL9Q5SY16 702 aaKnown RBP10.37□□□□□ -0.75
VPS39-207ENST00000563692 ATL3Q6DD88 541 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 MICU3Q86XE3 530 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 DGKHQ86XP1 1220 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 ZFPM1Q8IX07 1006 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 TRIM22Q8IYM9 498 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 FANCBQ8NB91 859 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 C8orf76Q96K31 380 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 R3HDMLQ9H3Y0 253 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 RBM28Q9NW13 759 aaKnown RBP10.37□□□□□ -0.75
VPS39-207ENST00000563692 CFAP45Q9UL16 551 aa10.37□□□□□ -0.75
VPS39-207ENST00000563692 LAMA4Q16363 1823 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 CTNND1O60716 968 aaKnown RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 TSPY3P0CV98 308 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 TSPY8P0CW00 308 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 CYP2D6P10635 497 aa10.36□□□□□ -0.75
VPS39-207ENST00000563692 AKAP17AQ02040 695 aaKnown RBP10.36□□□□□ -0.75
VPS39-207ENST00000563692 MLLT1Q03111 559 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms