RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 RASGRP2Q7LDG7 609 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 PHKBQ93100 1093 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 HOOK2Q96ED9 719 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 ZNF341Q9BYN7 854 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 ZNF112Q9UJU3 913 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 TCHHQ07283 1943 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 CNTNAP5Q8WYK1 1306 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 PALM3A6NDB9 673 aaPredicted RBP15.79■□□□□ 0.12
VPS39-206ENST00000562662 ADM5C9JUS6 153 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 STX6O43752 255 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 FMNL1O95466 1100 aaPredicted RBP15.79■□□□□ 0.12
VPS39-206ENST00000562662 SNHG28P0DPA3 235 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 PDCP20941 246 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 KIF5BP33176 963 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 LARP1BQ659C4 914 aaKnown RBP15.79■□□□□ 0.12
VPS39-206ENST00000562662 CMTR1Q8N1G2 835 aaKnown RBP15.79■□□□□ 0.12
VPS39-206ENST00000562662 FAM184AQ8NB25 1140 aa15.79■□□□□ 0.12
VPS39-206ENST00000562662 ORC3Q9UBD5 711 aaPredicted RBP15.79■□□□□ 0.12
VPS39-206ENST00000562662 DCAF8L1A6NGE4 600 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 USP17L5A8MUK1 530 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 PDHBP11177 359 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 ATP2B2Q01814 1243 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 SSRP1Q08945 709 aaKnown RBP15.78■□□□□ 0.12
VPS39-206ENST00000562662 SUPT20HL1Q3ZLR7 823 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 DLK2Q6UY11 383 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 PNMA8AQ86V59 439 aaPredicted RBP15.78■□□□□ 0.12
VPS39-206ENST00000562662 SULF1Q8IWU6 871 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 STAG2Q8N3U4 1231 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 SRBD1Q8N5C6 995 aaKnown RBP15.78■□□□□ 0.12
VPS39-206ENST00000562662 SLC26A6Q9BXS9 759 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 GINM1Q9NU53 330 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.78■□□□□ 0.12
VPS39-206ENST00000562662 MTMR6Q9Y217 621 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 KIF3AQ9Y496 699 aa15.78■□□□□ 0.12
VPS39-206ENST00000562662 WDR33Q9C0J8 1336 aaKnown RBP15.77■□□□□ 0.12
VPS39-206ENST00000562662 A0A1W2PRG0 241 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 CTNND1O60716 968 aaKnown RBP15.77■□□□□ 0.12
VPS39-206ENST00000562662 ASNSP08243 561 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 PARP1P09874 1014 aaKnown RBP15.77■□□□□ 0.12
VPS39-206ENST00000562662 INPP5BP32019 993 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 SLC35G1Q2M3R5 365 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 EAPPQ56P03 285 aaPredicted RBP15.77■□□□□ 0.12
VPS39-206ENST00000562662 KRT26Q7Z3Y9 468 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 TNPO1Q92973 898 aaKnown RBP15.77■□□□□ 0.12
VPS39-206ENST00000562662 RNF26Q9BY78 433 aaPredicted RBP15.77■□□□□ 0.12
VPS39-206ENST00000562662 SYNPO2Q9UMS6 1093 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 MTMR7Q9Y216 660 aa15.77■□□□□ 0.12
VPS39-206ENST00000562662 UBE2Q2LH0YL09 131 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 PRPF3O43395 683 aaKnown RBP15.76■□□□□ 0.11
VPS39-206ENST00000562662 ZSCAN22P10073 491 aaPredicted RBP15.76■□□□□ 0.11
VPS39-206ENST00000562662 PDIA4P13667 645 aaKnown RBP15.76■□□□□ 0.11
VPS39-206ENST00000562662 GNAQP50148 359 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 USP17L2Q6R6M4 530 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 USP48Q86UV5 1035 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 CCDC82Q8N4S0 544 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 KLRG1Q96E93 195 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 ARHGEF10LQ9HCE6 1279 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 FZD1Q9UP38 647 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 PTPRFP10586 1907 aa15.76■□□□□ 0.11
VPS39-206ENST00000562662 VPS37CA5D8V6 355 aaPredicted RBP15.75■□□□□ 0.11
VPS39-206ENST00000562662 DEXIO95424 95 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 POTEIP0CG38 1075 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 POTEJP0CG39 1038 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 GOLGA8HP0CJ92 632 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 ECE1P42892 770 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 ZNF543Q08ER8 600 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 PKN1Q16512 942 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 ASPRV1Q53RT3 343 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 CDC37L1Q7L3B6 337 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 CCDC84Q86UT8 332 aaPredicted RBP15.75■□□□□ 0.11
VPS39-206ENST00000562662 TRIM22Q8IYM9 498 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 RGS22Q8NE09 1264 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 GMCL1P1Q8NEA9 526 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 ACER1Q8TDN7 264 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 DCAF4Q8WV16 495 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 CDCA5Q96FF9 252 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 AIFM3Q96NN9 605 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 WRNIP1Q96S55 665 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 LZTS2Q9BRK4 669 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 ALG1Q9BT22 464 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 GLIS2Q9BZE0 524 aaPredicted RBP15.75■□□□□ 0.11
VPS39-206ENST00000562662 RRAGCQ9HB90 399 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 TMX2Q9Y320 296 aa15.75■□□□□ 0.11
VPS39-206ENST00000562662 FRMPD2Q68DX3 1309 aaPredicted RBP15.74■□□□□ 0.11
VPS39-206ENST00000562662 KLRF2D3W0D1 207 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 CYTH3O43739 400 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 USP2O75604 605 aaPredicted RBP15.74■□□□□ 0.11
VPS39-206ENST00000562662 F13A1P00488 732 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 SMARCA1P28370 1054 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 FOSBP53539 338 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 NOL9Q5SY16 702 aaKnown RBP15.74■□□□□ 0.11
VPS39-206ENST00000562662 FOXD4L5Q5VV16 416 aaPredicted RBP15.74■□□□□ 0.11
VPS39-206ENST00000562662 SLFN13Q68D06 897 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 SCYL3Q8IZE3 742 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.74■□□□□ 0.11
VPS39-206ENST00000562662 FOXD4L4Q8WXT5 416 aaPredicted RBP15.74■□□□□ 0.11
VPS39-206ENST00000562662 SPZ1Q9BXG8 430 aa15.74■□□□□ 0.11
VPS39-206ENST00000562662 PARP14Q460N5 1801 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 F5H6K3 240 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 NDUFB10O96000 172 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms