RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 POTEB2H3BUK9 544 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 CYP2C19P33261 490 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 FAM109BQ6ICB4 259 aaPredicted RBP19.91■□□□□ 0.78
CLN3-208ENST00000561505 TMEM179Q6ZVK1 233 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 SIRT2Q8IXJ6 389 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 MB21D1Q8N884 522 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 KIF1BPQ96EK5 621 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 SPATC1LQ9H0A9 340 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 IL1RAPL2Q9NP60 686 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 MCM9Q9NXL9 1143 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 SWAP70Q9UH65 585 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 TMX2Q9Y320 296 aa19.91■□□□□ 0.78
CLN3-208ENST00000561505 NAV1Q8NEY1 1877 aa19.9■□□□□ 0.78
CLN3-208ENST00000561505 DSG3P32926 999 aa19.9■□□□□ 0.78
CLN3-208ENST00000561505 HNRNPUQ00839 825 aaKnown RBP eCLIP19.9■□□□□ 0.78
CLN3-208ENST00000561505 CLASRPQ8N2M8 674 aaKnown RBP19.9■□□□□ 0.78
CLN3-208ENST00000561505 LCORLQ8N3X6 602 aa19.9■□□□□ 0.78
CLN3-208ENST00000561505 PANK1Q8TE04 598 aa19.9■□□□□ 0.78
CLN3-208ENST00000561505 CWC22Q9HCG8 908 aaKnown RBP19.9■□□□□ 0.78
CLN3-208ENST00000561505 ADAMTS5Q9UNA0 930 aa19.9■□□□□ 0.78
CLN3-208ENST00000561505 DLL1O00548 723 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 COBLO75128 1261 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 ADORA2AP29274 412 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 Q7L0L9 218 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 SDR42E1Q8WUS8 393 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 SENP6Q9GZR1 1112 aaPredicted RBP19.89■□□□□ 0.77
CLN3-208ENST00000561505 MROH8Q9H579 483 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 ATP8A2Q9NTI2 1148 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 ZBTB40Q9NUA8 1239 aa19.89■□□□□ 0.77
CLN3-208ENST00000561505 ERCC3P19447 782 aa19.88■□□□□ 0.77
CLN3-208ENST00000561505 ADD2P35612 726 aa19.88■□□□□ 0.77
CLN3-208ENST00000561505 SNX17Q15036 470 aa19.88■□□□□ 0.77
CLN3-208ENST00000561505 CCDC17Q96LX7 622 aa19.88■□□□□ 0.77
CLN3-208ENST00000561505 GOLIM4O00461 696 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 SEPT4O43236 478 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 RAB11FIP3O75154 756 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 CYP2D6P10635 497 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 MS4A1P11836 297 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 ATP5JP18859 108 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 C12orf60Q5U649 245 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 WDR78Q5VTH9 848 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 C1orf53Q5VUE5 145 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 SLC44A5Q8NCS7 719 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 ARRDC4Q8NCT1 418 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 VCPKMTQ9H867 229 aa19.87■□□□□ 0.77
CLN3-208ENST00000561505 CUL9Q8IWT3 2517 aa19.86■□□□□ 0.77
CLN3-208ENST00000561505 ZBED9Q6R2W3 1325 aa19.86■□□□□ 0.77
CLN3-208ENST00000561505 MDM2Q00987 491 aaPredicted RBP19.86■□□□□ 0.77
CLN3-208ENST00000561505 DPP9Q86TI2 863 aa19.86■□□□□ 0.77
CLN3-208ENST00000561505 DYNLL2Q96FJ2 89 aa19.86■□□□□ 0.77
CLN3-208ENST00000561505 NRBP1Q9UHY1 535 aa19.86■□□□□ 0.77
CLN3-208ENST00000561505 AKR1B1P15121 316 aa19.85■□□□□ 0.77
CLN3-208ENST00000561505 UBE3CQ15386 1083 aa19.85■□□□□ 0.77
CLN3-208ENST00000561505 SLC39A5Q6ZMH5 540 aa19.85■□□□□ 0.77
CLN3-208ENST00000561505 ARMT1Q9H993 441 aa19.85■□□□□ 0.77
CLN3-208ENST00000561505 PAG1Q9NWQ8 432 aa19.85■□□□□ 0.77
CLN3-208ENST00000561505 PARP14Q460N5 1801 aa19.85■□□□□ 0.77
CLN3-208ENST00000561505 MPHOSPH10O00566 681 aaKnown RBP19.84■□□□□ 0.77
CLN3-208ENST00000561505 WDR46O15213 610 aaKnown RBP19.84■□□□□ 0.77
CLN3-208ENST00000561505 PRKAB2O43741 272 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 HMMRO75330 724 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 IFIT2P09913 472 aaKnown RBP19.84■□□□□ 0.77
CLN3-208ENST00000561505 CNGA1P29973 690 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 RTP1P59025 263 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 C16orf86Q6ZW13 317 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 ATG4CQ96DT6 458 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 MAML3Q96JK9 1138 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 HAUS7Q99871 368 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 TANGO6Q9C0B7 1094 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 SH2D4AQ9H788 454 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 ARHGEF10LQ9HCE6 1279 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 SLC5A4Q9NY91 659 aa19.84■□□□□ 0.77
CLN3-208ENST00000561505 LTBP2Q14767 1821 aa19.83■□□□□ 0.77
CLN3-208ENST00000561505 SMIM22K7EJ46 135 aa19.83■□□□□ 0.77
CLN3-208ENST00000561505 SLC25A27O95847 323 aa19.83■□□□□ 0.77
CLN3-208ENST00000561505 CDK8P49336 464 aa19.83■□□□□ 0.77
CLN3-208ENST00000561505 ICA1Q05084 483 aa19.83■□□□□ 0.77
CLN3-208ENST00000561505 DNAJC2Q99543 621 aaKnown RBP19.83■□□□□ 0.77
CLN3-208ENST00000561505 DDX19BQ9UMR2 479 aa19.83■□□□□ 0.77
CLN3-208ENST00000561505 DIS3Q9Y2L1 958 aaKnown RBP19.83■□□□□ 0.77
CLN3-208ENST00000561505 LAMA2P24043 3122 aaKnown RBP19.82■□□□□ 0.76
CLN3-208ENST00000561505 MBD4O95243 580 aa19.82■□□□□ 0.76
CLN3-208ENST00000561505 TMEM132BQ14DG7 1078 aa19.82■□□□□ 0.76
CLN3-208ENST00000561505 SLFNL1Q499Z3 407 aa19.82■□□□□ 0.76
CLN3-208ENST00000561505 GJC2Q5T442 439 aaPredicted RBP19.82■□□□□ 0.76
CLN3-208ENST00000561505 RIOX2Q8IUF8 465 aa19.82■□□□□ 0.76
CLN3-208ENST00000561505 REPS2Q8NFH8 660 aa19.82■□□□□ 0.76
CLN3-208ENST00000561505 LBHD1Q9BQE6 289 aaPredicted RBP19.82■□□□□ 0.76
CLN3-208ENST00000561505 ROBO3Q96MS0 1386 aa19.82■□□□□ 0.76
CLN3-208ENST00000561505 USP17L12C9JPN9 530 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 USP17L21D6R901 530 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 FLOT1O75955 427 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 ATN1P54259 1190 aaPredicted RBP19.81■□□□□ 0.76
CLN3-208ENST00000561505 LRRC41Q15345 812 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 CLEC10AQ8IUN9 316 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 MIER1Q8N108 512 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 GUCD1Q96NT3 240 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-208ENST00000561505 KANSL2Q9H9L4 492 aa19.81■□□□□ 0.76
CLN3-208ENST00000561505 FCER1AP12319 257 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms