RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-225	ENST00000561391	ECE1	P42892	770 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	SIK1	P57059	783 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	EAPP	Q56P03	285 aa	Predicted RBP	4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	ARMC10	Q8N2F6	343 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	RGS22	Q8NE09	1264 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	KCNF1	Q9H3M0	494 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	C14orf93	Q9H972	538 aa	Known RBP	4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	C11orf16	Q9NQ32	467 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	TLR7	Q9NYK1	1049 aa	Known RBP	4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	CNTN3	Q9P232	1028 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	PPME1	Q9Y570	386 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	TRPM1	Q7Z4N2	1603 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	USP47	Q96K76	1375 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	CCDC7	Q96M83	1385 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	PPIP5K1	Q6PFW1	1433 aa		4.63	□□□□□ -1.67
SPG11-225	ENST00000561391	SBF1	O95248	1867 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	PIK3C2A	O00443	1686 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	TREH	O43280	583 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	SART1	O43290	800 aa	Known RBP	4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	WISP1	O95388	367 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	CYP2E1	P05181	493 aa	Predicted RBP	4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	P4HB	P07237	508 aa	Known RBP	4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	CES1	P23141	567 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	ITGAE	P38570	1179 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	USPL1	Q5W0Q7	1092 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	XKR5	Q6UX68	686 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	LDHD	Q86WU2	507 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	ABI1	Q8IZP0	508 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	CNTROB	Q8N137	903 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	SHKBP1	Q8TBC3	707 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	BCL2L13	Q9BXK5	485 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	KANSL3	Q9P2N6	904 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	TRIM33	Q9UPN9	1127 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	WNK3	Q9BYP7	1800 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	EIF3A	Q14152	1382 aa	Known RBP	4.62	□□□□□ -1.67
SPG11-225	ENST00000561391	SPATA31E1	Q6ZUB1	1445 aa		4.62	□□□□□ -1.67
SPG11-225	ENST00000561391		A0A0C4DFX4	3053 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	KNDC1	Q76NI1	1749 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	PPL	O60437	1756 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	PNMA6F	A0A0J9YX94	578 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	PRR19	A6NJB7	356 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	EIF1AY	O14602	144 aa	Known RBP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	EREG	O14944	169 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	CPNE3	O75131	537 aa	Known RBP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	IGHA2	P01877	340 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	C8A	P07357	584 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	ERCC3	P19447	782 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	CD68	P34810	354 aa	Predicted RBP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	MAP2K2	P36507	400 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	TMF1	P82094	1093 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	TAGLN	Q01995	201 aa	Known RBP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	FMR1	Q06787	632 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	DSC3	Q14574	896 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	MAP1S	Q66K74	1059 aa	Predicted RBP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	TXNDC11	Q6PKC3	985 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	ARHGEF25	Q86VW2	580 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	NCAPG2	Q86XI2	1143 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	NPAS4	Q8IUM7	802 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	CACTIN-AS1	Q8N1I8	211 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	SNX29	Q8TEQ0	813 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	MYRFL	Q96LU7	910 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	CSRNP1	Q96S65	589 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	SETDB2	Q96T68	719 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	CDK19	Q9BWU1	502 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	ZFYVE28	Q9HCC9	887 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	VPS8	Q8N3P4	1428 aa		4.61	□□□□□ -1.67
SPG11-225	ENST00000561391	RGPD5	Q99666	1765 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	LINC01387	J3KSC0	135 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	CA12	O43570	354 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	LDHB	P07195	334 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	HMGB2	P26583	209 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	CDC25B	P30305	580 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	ATP2B2	Q01814	1243 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	DUOXA2	Q1HG44	320 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	CIAPIN1	Q6FI81	312 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	FAM117B	Q6P1L5	589 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	NLGN1	Q8N2Q7	840 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	GALNT11	Q8NCW6	608 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	OR13H1	Q8NG92	308 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	GIMAP7	Q8NHV1	300 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	GIPC2	Q8TF65	315 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	PMEPA1	Q969W9	287 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	ALKBH8	Q96BT7	664 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	ASIC4	Q96FT7	647 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	FAM46A	Q96IP4	442 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	TAF1D	Q9H5J8	278 aa	Predicted RBP	4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	NSD2	O96028	1365 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	ANKRD36B	Q8N2N9	1353 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	LY75	O60449	1722 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	ITSN1	Q15811	1721 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	KIAA1551	Q9HCM1	1747 aa		4.6	□□□□□ -1.67
SPG11-225	ENST00000561391	FAM177B	A6PVY3	158 aa		4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	WDR64	B1ANS9	1081 aa		4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	POLR3A	O14802	1390 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	SOX18	P35713	384 aa		4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	RBM25	P49756	843 aa	Known RBP	4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	HYAL2	Q12891	473 aa		4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	ENOX2	Q16206	610 aa	Known RBP	4.59	□□□□□ -1.67
SPG11-225	ENST00000561391	MPRIP	Q6WCQ1	1025 aa		4.59	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms