RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RCAN3Q9UKA8 241 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 A0A1W2PRG0 241 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 SMIM22K7EJ46 135 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 MPHOSPH10O00566 681 aaKnown RBP14.08□□□□□ -0.16
USP3-220ENST00000561381 ATMINO43313 823 aaPredicted RBP14.08□□□□□ -0.16
USP3-220ENST00000561381 ZKSCAN1P17029 563 aaPredicted RBP14.08□□□□□ -0.16
USP3-220ENST00000561381 USP14P54578 494 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 CACNB2Q08289 660 aaPredicted RBP14.08□□□□□ -0.16
USP3-220ENST00000561381 DYNLL2Q96FJ2 89 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 RPAP3Q9H6T3 665 aaPredicted RBP14.08□□□□□ -0.16
USP3-220ENST00000561381 PAG1Q9NWQ8 432 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 BTBD7Q9P203 1132 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 OGDHLQ9ULD0 1010 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 RABGAP1Q9Y3P9 1069 aa14.08□□□□□ -0.16
USP3-220ENST00000561381 RANBP2P49792 3224 aaKnown RBP14.07□□□□□ -0.16
USP3-220ENST00000561381 SPDYE16A6NNV3 312 aaPredicted RBP14.07□□□□□ -0.16
USP3-220ENST00000561381 MBD4O95243 580 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 CAPN2P17655 700 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 CCND3P30281 292 aaPredicted RBP14.07□□□□□ -0.16
USP3-220ENST00000561381 ADD2P35612 726 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 RGS2P41220 211 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 KIAA1755Q5JYT7 1200 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 ANKLE1Q8NAG6 615 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 APBA2Q99767 749 aa14.07□□□□□ -0.16
USP3-220ENST00000561381 CYP2D7A0A087X1C5 515 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 SMARCA5O60264 1052 aaPredicted RBP14.06□□□□□ -0.16
USP3-220ENST00000561381 ATP5JP18859 108 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 MAP2K5Q13163 448 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 WDR78Q5VTH9 848 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 CLEC10AQ8IUN9 316 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 C7orf61Q8IZ16 206 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 HAUS7Q99871 368 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 NBPF3Q9H094 633 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 CWC22Q9HCG8 908 aaKnown RBP14.06□□□□□ -0.16
USP3-220ENST00000561381 FLRT1Q9NZU1 646 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 STAP2Q9UGK3 403 aa14.06□□□□□ -0.16
USP3-220ENST00000561381 BAZ2AQ9UIF9 1905 aaKnown RBP14.05□□□□□ -0.16
USP3-220ENST00000561381 AKR1B1P15121 316 aa14.05□□□□□ -0.16
USP3-220ENST00000561381 CCNA1P78396 465 aa14.05□□□□□ -0.16
USP3-220ENST00000561381 LBX2Q6XYB7 198 aa14.05□□□□□ -0.16
USP3-220ENST00000561381 SIAH1Q8IUQ4 282 aa14.05□□□□□ -0.16
USP3-220ENST00000561381 TRMT44Q8IYL2 757 aaKnown RBP14.05□□□□□ -0.16
USP3-220ENST00000561381 C11orf49Q9H6J7 331 aa14.05□□□□□ -0.16
USP3-220ENST00000561381 ZMYND8Q9ULU4 1186 aaPredicted RBP14.05□□□□□ -0.16
USP3-220ENST00000561381 PTPREP23469 700 aa14.04□□□□□ -0.16
USP3-220ENST00000561381 TMEM179Q6ZVK1 233 aa14.04□□□□□ -0.16
USP3-220ENST00000561381 NPLOC4Q8TAT6 608 aa14.04□□□□□ -0.16
USP3-220ENST00000561381 METRNQ9UJH8 293 aa14.04□□□□□ -0.16
USP3-220ENST00000561381 PFASO15067 1338 aa14.04□□□□□ -0.16
USP3-220ENST00000561381 SZT2Q5T011 3432 aa14.04□□□□□ -0.16
USP3-220ENST00000561381 SLC15A5A6NIM6 579 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 USP17L12C9JPN9 530 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 USP17L21D6R901 530 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 SYN1P17600 705 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 GRB14Q14449 540 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 COG2Q14746 738 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 SPICE1Q8N0Z3 855 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 LRRCC1Q9C099 1032 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 TANGO6Q9C0B7 1094 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP3-220ENST00000561381 CHMP4BQ9H444 224 aaKnown RBP14.03□□□□□ -0.16
USP3-220ENST00000561381 PLSCR2Q9NRY7 297 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 ATP8A2Q9NTI2 1148 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 SWAP70Q9UH65 585 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 RLFQ13129 1914 aa14.03□□□□□ -0.16
USP3-220ENST00000561381 SOX1O00570 391 aaPredicted RBP14.02□□□□□ -0.17
USP3-220ENST00000561381 GLRX3O76003 335 aaKnown RBP14.02□□□□□ -0.17
USP3-220ENST00000561381 CDK8P49336 464 aa14.02□□□□□ -0.17
USP3-220ENST00000561381 NUBP1P53384 320 aa14.02□□□□□ -0.17
USP3-220ENST00000561381 UBE3CQ15386 1083 aa14.02□□□□□ -0.17
USP3-220ENST00000561381 C12orf60Q5U649 245 aa14.02□□□□□ -0.17
USP3-220ENST00000561381 MOV10L1Q9BXT6 1211 aaKnown RBP14.02□□□□□ -0.17
USP3-220ENST00000561381 PUS7LQ9H0K6 701 aaKnown RBP14.02□□□□□ -0.17
USP3-220ENST00000561381 IVNS1ABPQ9Y6Y0 642 aa14.02□□□□□ -0.17
USP3-220ENST00000561381 HOXC6P09630 235 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 COL6A1P12109 1028 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 CYP2C19P33261 490 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 ATP2B2Q01814 1243 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 ICA1Q05084 483 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 MFSD14CQ5VZR4 134 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 TSHZ3Q63HK5 1081 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 CTR9Q6PD62 1173 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 TRPV1Q8NER1 839 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 SLC39A7Q92504 469 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 ATG4CQ96DT6 458 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 GDF15Q99988 308 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 SPATC1LQ9H0A9 340 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 HOXC10Q9NYD6 342 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 TMX2Q9Y320 296 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 SLC4A4Q9Y6R1 1079 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 MYH7P12883 1935 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 MYH8P13535 1937 aa14.01□□□□□ -0.17
USP3-220ENST00000561381 MAP3K13O43283 966 aa14□□□□□ -0.17
USP3-220ENST00000561381 FLOT1O75955 427 aa14□□□□□ -0.17
USP3-220ENST00000561381 IGHA2P01877 340 aa14□□□□□ -0.17
USP3-220ENST00000561381 C7P10643 843 aa14□□□□□ -0.17
USP3-220ENST00000561381 ERCC3P19447 782 aa14□□□□□ -0.17
USP3-220ENST00000561381 ADORA2AP29274 412 aa14□□□□□ -0.17
USP3-220ENST00000561381 LRRC26Q2I0M4 334 aa14□□□□□ -0.17
USP3-220ENST00000561381 C16orf86Q6ZW13 317 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms