RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 JAG1P78504 1218 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 PPIGQ13427 754 aaKnown RBP eCLIP11.35□□□□□ -0.592e-8■□□□□ 9.8
SMAD3-215ENST00000560424 SKIV2LQ15477 1246 aaKnown RBP11.35□□□□□ -0.59
SMAD3-215ENST00000560424 RAB30Q15771 203 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 SHROOM1Q2M3G4 852 aaPredicted RBP11.35□□□□□ -0.59
SMAD3-215ENST00000560424 MICALL1Q8N3F8 863 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 ZNF384Q8TF68 577 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 C12orf42Q96LP6 360 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 PBX4Q9BYU1 374 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 DNAJC18Q9H819 358 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 HMG20BQ9P0W2 317 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 BTBD7Q9P203 1132 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 PALD1Q9ULE6 856 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 PHF24Q9UPV7 400 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 FLT1P17948 1338 aa11.35□□□□□ -0.59
SMAD3-215ENST00000560424 VCAM1P19320 739 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 PLS1Q14651 629 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 PRAMEF19Q5SWL8 479 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 NAA16Q6N069 864 aaPredicted RBP11.34□□□□□ -0.59
SMAD3-215ENST00000560424 LBX2Q6XYB7 198 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 MRPL50Q8N5N7 158 aaKnown RBP11.34□□□□□ -0.59
SMAD3-215ENST00000560424 NUP133Q8WUM0 1156 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.34□□□□□ -0.595e-11■□□□□ 10.7
SMAD3-215ENST00000560424 MTIF3Q9H2K0 278 aaKnown RBP11.34□□□□□ -0.59
SMAD3-215ENST00000560424 RPAP3Q9H6T3 665 aaPredicted RBP11.34□□□□□ -0.59
SMAD3-215ENST00000560424 SLC28A3Q9HAS3 691 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 CABP5Q9NP86 173 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 STARD7Q9NQZ5 370 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 SAP30BPQ9UHR5 308 aaKnown RBP11.34□□□□□ -0.59
SMAD3-215ENST00000560424 SYNGAP1Q96PV0 1343 aa11.34□□□□□ -0.59
SMAD3-215ENST00000560424 SIPA1L1O43166 1804 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 A0A1W2PQ45 241 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-215ENST00000560424 A0A1W2PQY0 241 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 SPDYE16A6NNV3 312 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-215ENST00000560424 PGK1P00558 417 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 TIMP1P01033 207 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 PBX2P40425 430 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 AAMPQ13685 434 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 PI16Q6UXB8 463 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 NCAPG2Q86XI2 1143 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 TMEM199Q8N511 208 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 NECAB3Q96P71 396 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-215ENST00000560424 TANGO6Q9C0B7 1094 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 HOXC10Q9NYD6 342 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 CXXC1Q9P0U4 656 aaPredicted RBP11.33□□□□□ -0.6
SMAD3-215ENST00000560424 MROH7Q68CQ1 1323 aa11.33□□□□□ -0.6
SMAD3-215ENST00000560424 ZNF236Q9UL36 1845 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 PLXNA1Q9UIW2 1896 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 BCAR3O75815 825 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 UQCRFS1P1P0C7P4 283 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 MS4A1P11836 297 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 ERCC3P19447 782 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 TFCP2Q12800 502 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 TMEM31Q5JXX7 168 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 PSRC1Q6PGN9 363 aaPredicted RBP11.32□□□□□ -0.6
SMAD3-215ENST00000560424 METTL16Q86W50 562 aaKnown RBP11.32□□□□□ -0.6
SMAD3-215ENST00000560424 SHCBP1Q8NEM2 672 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 ARHGAP45Q92619 1136 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 TOX2Q96NM4 488 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 LRFN3Q9BTN0 628 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 MOV10L1Q9BXT6 1211 aaKnown RBP11.32□□□□□ -0.6
SMAD3-215ENST00000560424 SPATC1LQ9H0A9 340 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 KIAA1683Q9H0B3 1180 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 COPRSQ9NQ92 184 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 PPP4R2Q9NY27 417 aa11.32□□□□□ -0.6
SMAD3-215ENST00000560424 NCOR1O75376 2440 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 MYO9BQ13459 2157 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 TCF20Q9UGU0 1960 aaKnown RBP11.31□□□□□ -0.6
SMAD3-215ENST00000560424 GRXCR1A8MXD5 290 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 FCER1AP12319 257 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 AKR1A1P14550 325 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 USP5P45974 858 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 FAAP100Q0VG06 881 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 ADGRE1Q14246 886 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 COG2Q14746 738 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 ABCB5Q2M3G0 1257 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 CERKLQ49MI3 558 aaPredicted RBP11.31□□□□□ -0.6
SMAD3-215ENST00000560424 MFSD5Q6N075 450 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 ANKRD33Q7Z3H0 272 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 SSH1Q8WYL5 1049 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 MAML3Q96JK9 1138 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 MROH8Q9H579 483 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 NRBP1Q9UHY1 535 aa11.31□□□□□ -0.6
SMAD3-215ENST00000560424 MOXD2PA6NHM9 499 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 IPO8O15397 1037 aaKnown RBP11.3□□□□□ -0.6
SMAD3-215ENST00000560424 COBLO75128 1261 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 IGHA2P01877 340 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 ARID4AP29374 1257 aaPredicted RBP11.3□□□□□ -0.6
SMAD3-215ENST00000560424 TMEM240Q5SV17 173 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 SAMD1Q6SPF0 538 aaPredicted RBP11.3□□□□□ -0.6
SMAD3-215ENST00000560424 ABRAQ8N0Z2 381 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 MB21D1Q8N884 522 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 VTI1AQ96AJ9 217 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 GLT1D1Q96MS3 346 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 NKX2-4Q9H2Z4 354 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 SERPINB13Q9UIV8 391 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 CNPY2Q9Y2B0 182 aa11.3□□□□□ -0.6
SMAD3-215ENST00000560424 TLR3O15455 904 aaKnown RBP11.29□□□□□ -0.6
SMAD3-215ENST00000560424 SRGAP3O43295 1099 aa11.29□□□□□ -0.6
SMAD3-215ENST00000560424 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms