RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 SEC23AQ15436 765 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 IER5LQ5T953 404 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 APOA5Q6Q788 366 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 USP48Q86UV5 1035 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 CCDC83Q8IWF9 413 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 ZFPM1Q8IX07 1006 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 ENAHQ8N8S7 591 aaPredicted RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 CTCFLQ8NI51 663 aaPredicted RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 ANKS1AQ92625 1134 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 GTF3C6Q969F1 213 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 ZKSCAN3Q9BRR0 538 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 LARP6Q9BRS8 491 aaKnown RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 GLIS2Q9BZE0 524 aaPredicted RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 TMEM39BQ9GZU3 492 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 LY9Q9HBG7 655 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 GBA2Q9HCG7 927 aaPredicted RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 CIZ1Q9ULV3 898 aaPredicted RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 TACC3Q9Y6A5 838 aa7.51□□□□□ -1.21
SPG11-221ENST00000560299 DDX60LQ5H9U9 1706 aaKnown RBP7.51□□□□□ -1.21
SPG11-221ENST00000560299 PLIN4Q96Q06 1357 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 PCNTO95613 3336 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 GOLGA8AA7E2F4 631 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 SMIM22K7EJ46 135 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 DDAH1O94760 285 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 CELF2O95319 508 aaKnown RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 TTLL1O95922 423 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 ZBTB48P10074 688 aaPredicted RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 TOP1P11387 765 aaKnown RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 KIF5BP33176 963 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 SHMT1P34896 483 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 GNAQP50148 359 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 CCT2P78371 535 aaKnown RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 NUCB2P80303 420 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 ABCB5Q2M3G0 1257 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 DEFB115Q30KQ5 88 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 NOM1Q5C9Z4 860 aaKnown RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 TATDN1Q6P1N9 297 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 TMEM179Q6ZVK1 233 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 SH3BP5LQ7L8J4 393 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 MICU3Q86XE3 530 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 ZNF654Q8IZM8 581 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 FAM184AQ8NB25 1140 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 SLC44A5Q8NCS7 719 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 NUP133Q8WUM0 1156 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 MAP3K14Q99558 947 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 CFHR5Q9BXR6 569 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 KANSL2Q9H9L4 492 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 ZCCHC17Q9NP64 241 aaKnown RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 RBM28Q9NW13 759 aaKnown RBP7.5□□□□□ -1.21
SPG11-221ENST00000560299 CHMP5Q9NZZ3 219 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 ZNF112Q9UJU3 913 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 BRPF3Q9ULD4 1205 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 STX8Q9UNK0 236 aa7.5□□□□□ -1.21
SPG11-221ENST00000560299 TRAF5O00463 557 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 AKR1B1P15121 316 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 AKAP17AQ02040 695 aaKnown RBP7.49□□□□□ -1.21
SPG11-221ENST00000560299 MAP2K1Q02750 393 aaPredicted RBP7.49□□□□□ -1.21
SPG11-221ENST00000560299 SCRN1Q12765 414 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 COL9A3Q14050 684 aaPredicted RBP7.49□□□□□ -1.21
SPG11-221ENST00000560299 RTN1Q16799 776 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 RGMBQ6NW40 437 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 ARMC9Q7Z3E5 817 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 TRIM22Q8IYM9 498 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 ANKRD13AQ8IZ07 590 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 NECAB1Q8N987 351 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 FANCBQ8NB91 859 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 PNMA1Q8ND90 353 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 WASF1Q92558 559 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 LZTS2Q9BRK4 669 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 ZNF341Q9BYN7 854 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 GPHNQ9NQX3 736 aaPredicted RBP7.49□□□□□ -1.21
SPG11-221ENST00000560299 MTMR4Q9NYA4 1195 aa7.49□□□□□ -1.21
SPG11-221ENST00000560299 ASTN2O75129 1339 aaPredicted RBP7.49□□□□□ -1.21
SPG11-221ENST00000560299 TESPA1A2RU30 521 aaPredicted RBP7.48□□□□□ -1.21
SPG11-221ENST00000560299 ADM5C9JUS6 153 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 NMT2O60551 498 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 CTNND1O60716 968 aaKnown RBP7.48□□□□□ -1.21
SPG11-221ENST00000560299 LARGE1O95461 756 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 ASNSP08243 561 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 SLC10A3P09131 477 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 GJB2P29033 226 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 IREB2P48200 963 aaKnown RBP7.48□□□□□ -1.21
SPG11-221ENST00000560299 ATP2B2Q01814 1243 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 SSRP1Q08945 709 aaKnown RBP7.48□□□□□ -1.21
SPG11-221ENST00000560299 RAB3GAP1Q15042 981 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 NOL9Q5SY16 702 aaKnown RBP7.48□□□□□ -1.21
SPG11-221ENST00000560299 MIGA2Q7L4E1 593 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.48□□□□□ -1.21
SPG11-221ENST00000560299 CEP95Q96GE4 821 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 TMEM47Q9BQJ4 181 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 SH2D4AQ9H788 454 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 DNAJC18Q9H819 358 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 ARHGEF10LQ9HCE6 1279 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 IL17RBQ9NRM6 502 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 SAGE1Q9NXZ1 904 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 NYAP2Q9P242 653 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 RBM27Q9P2N5 1060 aaKnown RBP7.48□□□□□ -1.21
SPG11-221ENST00000560299 CLIP2Q9UDT6 1046 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 SYNPO2Q9UMS6 1093 aa7.48□□□□□ -1.21
SPG11-221ENST00000560299 HPS5Q9UPZ3 1129 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms