RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 USP17L20D6RJB6 530 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 WDR46O15213 610 aaKnown RBP14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 MCM5P33992 734 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 GCLCP48506 637 aaPredicted RBP14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 ANAPC15P60006 121 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 USP17L24Q0WX57 530 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 ARHGEF6Q15052 776 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 FAM47AQ5JRC9 791 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 TMEM87BQ96K49 555 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 ZSCAN10Q96SZ4 725 aaPredicted RBP14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 UPF2Q9HAU5 1272 aaKnown RBP14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 HOXC10Q9NYD6 342 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 ZSWIM5Q9P217 1185 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 CLIP2Q9UDT6 1046 aa14.18□□□□□ -0.14
RABGGTA-215ENST00000560207 B4E1Z4 1266 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 BTBD19C9JJ37 291 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 SMIM22K7EJ46 135 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 PDHXO00330 501 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 FDX1P10109 184 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 ATP2B2Q01814 1243 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 TAF1CQ15572 869 aaPredicted RBP14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 USP26Q9BXU7 913 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 EMILIN3Q9NT22 766 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 RNF186Q9NXI6 227 aa14.17□□□□□ -0.14
RABGGTA-215ENST00000560207 NEDD4P46934 1319 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 PARP14Q460N5 1801 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 IGF2BP3O00425 579 aaKnown RBP eCLIP14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 CTCFP49711 727 aaPredicted RBP14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 IRX3P78415 501 aaPredicted RBP14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 MOGSQ13724 837 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 GPAT2Q6NUI2 795 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 SIAH1Q8IUQ4 282 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 ACER1Q8TDN7 264 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 SMCR8Q8TEV9 937 aaPredicted RBP14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 GMCL1Q96IK5 515 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 NEK1Q96PY6 1258 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 PTPN18Q99952 460 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 IL17RBQ9NRM6 502 aa14.16□□□□□ -0.14
RABGGTA-215ENST00000560207 A0A1W2PRG0 241 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 F5H6K3 240 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 TLR2O60603 784 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 PLA2G6O60733 806 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 TRPA1O75762 1119 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 VCAM1P19320 739 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 KLRC3Q07444 240 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 COG2Q14746 738 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 CATSPERGQ6ZRH7 1159 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 FAM43AQ8N2R8 423 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 MB21D1Q8N884 522 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 DCAF4Q8WV16 495 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 ZIC5Q96T25 663 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 TM6SF1Q9BZW5 370 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 KAT14Q9H8E8 782 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 PNMA2Q9UL42 364 aa14.15□□□□□ -0.14
RABGGTA-215ENST00000560207 LIFRP42702 1097 aa14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 SHROOM1Q2M3G4 852 aaPredicted RBP14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 IFIT1BQ5T764 474 aaKnown RBP14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 LBX2Q6XYB7 198 aa14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 DHX32Q7L7V1 743 aaKnown RBP14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 CCDC84Q86UT8 332 aaPredicted RBP14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 MB21D2Q8IYB1 491 aaPredicted RBP14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 CHURC1Q8WUH1 139 aa14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 INCENPQ9NQS7 918 aa14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 TNKSO95271 1327 aa14.14□□□□□ -0.15
RABGGTA-215ENST00000560207 IFIT3O14879 490 aaKnown RBP14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 GNRH1P01148 92 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 CALM1P0DP23 149 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 CALM2P0DP24 149 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 CALM3P0DP25 149 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 BMP3P12645 472 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 SLC1A4P43007 532 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 WTAPQ15007 396 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 ZYXQ15942 572 aaKnown RBP14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 GPATCH4Q5T3I0 446 aaKnown RBP14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 SLFN13Q68D06 897 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 BLOC1S2Q6QNY1 142 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 FAM160B2Q86V87 743 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 FBXL16Q8N461 479 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 PRPF38AQ8NAV1 312 aaKnown RBP14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 MAP3K14Q99558 947 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 TMEM47Q9BQJ4 181 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 ASCC2Q9H1I8 757 aaPredicted RBP14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 RPAP3Q9H6T3 665 aaPredicted RBP14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 FEM1BQ9UK73 627 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 TACC3Q9Y6A5 838 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 RLFQ13129 1914 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 CEP350Q5VT06 3117 aa14.13□□□□□ -0.15
RABGGTA-215ENST00000560207 NDUFB10O96000 172 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 HSPA1AP0DMV8 641 aaKnown RBP14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 HSPA1BP0DMV9 641 aaKnown RBP14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 CCNA1P78396 465 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 CRHR2Q13324 411 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 KIF22Q14807 665 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 PPP2R5BQ15173 497 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 C8orf34Q49A92 452 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 TMEM67Q5HYA8 995 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 TREML2Q5T2D2 321 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 SYNE3Q6ZMZ3 975 aa14.12□□□□□ -0.15
RABGGTA-215ENST00000560207 STOX1Q6ZVD7 989 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms