RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 MTMR7Q9Y216 660 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 MTMR6Q9Y217 621 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 STK36Q9NRP7 1315 aa13.05□□□□□ -0.32
USP3-218ENST00000560202 VPS37CA5D8V6 355 aaPredicted RBP13.04□□□□□ -0.32
USP3-218ENST00000560202 PHF20L1A8MW92 1017 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 ZSCAN22P10073 491 aaPredicted RBP13.04□□□□□ -0.32
USP3-218ENST00000560202 ICA1Q05084 483 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 FUT2Q10981 343 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 FOXD4L5Q5VV16 416 aaPredicted RBP13.04□□□□□ -0.32
USP3-218ENST00000560202 PRAMEF18Q5VWM3 479 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 TRIM22Q8IYM9 498 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 FOXD4L4Q8WXT5 416 aaPredicted RBP13.04□□□□□ -0.32
USP3-218ENST00000560202 MKL1Q969V6 931 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 MAD2L2Q9UI95 211 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 ZBTB21Q9ULJ3 1066 aa13.04□□□□□ -0.32
USP3-218ENST00000560202 GREB1LQ9C091 1923 aaPredicted RBP13.04□□□□□ -0.32
USP3-218ENST00000560202 MYH8P13535 1937 aa13.03□□□□□ -0.32
USP3-218ENST00000560202 PALM3A6NDB9 673 aaPredicted RBP13.03□□□□□ -0.32
USP3-218ENST00000560202 POTECB2RU33 542 aa13.03□□□□□ -0.32
USP3-218ENST00000560202 GNAQP50148 359 aa13.03□□□□□ -0.32
USP3-218ENST00000560202 DCAF15Q66K64 600 aa13.03□□□□□ -0.32
USP3-218ENST00000560202 SULF1Q8IWU6 871 aa13.03□□□□□ -0.32
USP3-218ENST00000560202 STAG2Q8N3U4 1231 aa13.03□□□□□ -0.32
USP3-218ENST00000560202 SRBD1Q8N5C6 995 aaKnown RBP13.03□□□□□ -0.32
USP3-218ENST00000560202 ZC3H15Q8WU90 426 aaKnown RBP13.03□□□□□ -0.32
USP3-218ENST00000560202 RNF26Q9BY78 433 aaPredicted RBP13.03□□□□□ -0.32
USP3-218ENST00000560202 TAF1DQ9H5J8 278 aaPredicted RBP13.03□□□□□ -0.32
USP3-218ENST00000560202 DCAF8L1A6NGE4 600 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 USP17L5A8MUK1 530 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 H3BQV1 296 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 PARP1P09874 1014 aaKnown RBP13.02□□□□□ -0.32
USP3-218ENST00000560202 SNHG28P0DPA3 235 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 PDHBP11177 359 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 SUPT20HL1Q3ZLR7 823 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 IFFO2Q5TF58 517 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 USP17L2Q6R6M4 530 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 RASGRP2Q7LDG7 609 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 ALG1Q9BT22 464 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 ZNF341Q9BYN7 854 aa13.02□□□□□ -0.32
USP3-218ENST00000560202 PRPF3O43395 683 aaKnown RBP13.02□□□□□ -0.33
USP3-218ENST00000560202 DEXIO95424 95 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 ASNSP08243 561 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 GOLGA8HP0CJ92 632 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 FOSBP53539 338 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 AKAP17AQ02040 695 aaKnown RBP13.02□□□□□ -0.33
USP3-218ENST00000560202 CDC37L1Q7L3B6 337 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 WASF1Q92558 559 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 C8orf76Q96K31 380 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 LZTS2Q9BRK4 669 aa13.02□□□□□ -0.33
USP3-218ENST00000560202 V9GY48 417 aaPredicted RBP13.02□□□□□ -0.33
USP3-218ENST00000560202 ADM5C9JUS6 153 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 KLRF2D3W0D1 207 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 UBE2Q2LH0YL09 131 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 CTNND1O60716 968 aaKnown RBP13.01□□□□□ -0.33
USP3-218ENST00000560202 F13A1P00488 732 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 ASPRV1Q53RT3 343 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 EAPPQ56P03 285 aaPredicted RBP13.01□□□□□ -0.33
USP3-218ENST00000560202 KRT26Q7Z3Y9 468 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 PNMA8AQ86V59 439 aaPredicted RBP13.01□□□□□ -0.33
USP3-218ENST00000560202 AIFM3Q96NN9 605 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 ARHGEF10LQ9HCE6 1279 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 GINM1Q9NU53 330 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 ZNF112Q9UJU3 913 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 SYNPO2Q9UMS6 1093 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 CNTNAP5Q8WYK1 1306 aa13.01□□□□□ -0.33
USP3-218ENST00000560202 A0A1W2PRG0 241 aa13□□□□□ -0.33
USP3-218ENST00000560202 GUCY1B3Q02153 619 aa13□□□□□ -0.33
USP3-218ENST00000560202 NFKBIBQ15653 356 aa13□□□□□ -0.33
USP3-218ENST00000560202 SLFN13Q68D06 897 aa13□□□□□ -0.33
USP3-218ENST00000560202 CLEC17AQ6ZS10 378 aa13□□□□□ -0.33
USP3-218ENST00000560202 RGS22Q8NE09 1264 aa13□□□□□ -0.33
USP3-218ENST00000560202 GMCL1P1Q8NEA9 526 aa13□□□□□ -0.33
USP3-218ENST00000560202 FBXO18Q8NFZ0 1043 aa13□□□□□ -0.33
USP3-218ENST00000560202 GBP4Q96PP9 640 aa13□□□□□ -0.33
USP3-218ENST00000560202 GJB4Q9NTQ9 266 aa13□□□□□ -0.33
USP3-218ENST00000560202 TMX2Q9Y320 296 aa13□□□□□ -0.33
USP3-218ENST00000560202 WDR90Q96KV7 1748 aa13□□□□□ -0.33
USP3-218ENST00000560202 SSC5DA1L4H1 1573 aa13□□□□□ -0.33
USP3-218ENST00000560202 FRMPD2Q68DX3 1309 aaPredicted RBP12.99□□□□□ -0.33
USP3-218ENST00000560202 hCG_1642624A0A1W2PR95 340 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 F5H6K3 240 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 SMARCA1P28370 1054 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 INPP5BP32019 993 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 KLRC3Q07444 240 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 ZNF543Q08ER8 600 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 PKN1Q16512 942 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 SLC35G1Q2M3R5 365 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 OTUD7BQ6GQQ9 843 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 DLK2Q6UY11 383 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 ACER1Q8TDN7 264 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 DCAF4Q8WV16 495 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 RBM27Q9P2N5 1060 aaKnown RBP12.99□□□□□ -0.33
USP3-218ENST00000560202 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.99□□□□□ -0.33
USP3-218ENST00000560202 SCN4AP35499 1836 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 CYTH3O43739 400 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 RAD21O60216 631 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 BAG4O95429 457 aaKnown RBP12.99□□□□□ -0.33
USP3-218ENST00000560202 ECE1P42892 770 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 TRIM29Q14134 588 aa12.99□□□□□ -0.33
USP3-218ENST00000560202 GLIPR1L2Q4G1C9 344 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms