RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MAPK4P31152 587 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 ANKRD45Q5TZF3 282 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 LBX2Q6XYB7 198 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 NKX2-3Q8TAU0 364 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 TANGO6Q9C0B7 1094 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 CRISPLD2Q9H0B8 497 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 PCDH10Q9P2E7 1040 aa21.29■■□□□ 1
HDDC3-205ENST00000559898 FOXP2O15409 715 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 MX1P20591 662 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 RASA1P20936 1047 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 MNX1P50219 401 aaPredicted RBP21.28■■□□□ 1
HDDC3-205ENST00000559898 ATP2B2Q01814 1243 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 WDR78Q5VTH9 848 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 SAMD1Q6SPF0 538 aaPredicted RBP21.28■■□□□ 1
HDDC3-205ENST00000559898 CCDC129Q6ZRS4 1044 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 TMX2Q9Y320 296 aa21.28■■□□□ 1
HDDC3-205ENST00000559898 PRDM1O75626 825 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 PRKAR2AP13861 404 aaKnown RBP21.27■■□□□ 1
HDDC3-205ENST00000559898 CCND3P30281 292 aaPredicted RBP21.27■■□□□ 1
HDDC3-205ENST00000559898 CACNB2Q08289 660 aaPredicted RBP21.27■■□□□ 1
HDDC3-205ENST00000559898 SBK1Q52WX2 424 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 MAP3K21Q5TCX8 1036 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 NPLOC4Q8TAT6 608 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 GTF3C2Q8WUA4 911 aaPredicted RBP21.27■■□□□ 1
HDDC3-205ENST00000559898 ATG4CQ96DT6 458 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 VCPKMTQ9H867 229 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 FBXO28Q9NVF7 368 aa21.27■■□□□ 1
HDDC3-205ENST00000559898 ARPP21Q9UBL0 812 aaPredicted RBP21.27■■□□□ 1
HDDC3-205ENST00000559898 FRMPD3Q5JV73 1810 aa21.27■□□□□ 0.99
HDDC3-205ENST00000559898 MYH4Q9Y623 1939 aa21.26■□□□□ 0.99
HDDC3-205ENST00000559898 COG2Q14746 738 aa21.26■□□□□ 0.99
HDDC3-205ENST00000559898 DPF3Q92784 378 aa21.26■□□□□ 0.99
HDDC3-205ENST00000559898 PAWRQ96IZ0 340 aaKnown RBP21.26■□□□□ 0.99
HDDC3-205ENST00000559898 CCDC17Q96LX7 622 aa21.26■□□□□ 0.99
HDDC3-205ENST00000559898 FSD1Q9BTV5 496 aa21.26■□□□□ 0.99
HDDC3-205ENST00000559898 MOV10L1Q9BXT6 1211 aaKnown RBP21.26■□□□□ 0.99
HDDC3-205ENST00000559898 RPTORQ8N122 1335 aa21.26■□□□□ 0.99
HDDC3-205ENST00000559898 GLRX3O76003 335 aaKnown RBP21.25■□□□□ 0.99
HDDC3-205ENST00000559898 PTPREP23469 700 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 DSG3P32926 999 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 ZMYM1Q5SVZ6 1142 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 CCAR1Q8IX12 1150 aaKnown RBP21.25■□□□□ 0.99
HDDC3-205ENST00000559898 IFNL3Q8IZI9 196 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 EXOC6Q8TAG9 804 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 SOCS4Q8WXH5 440 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 NUP88Q99567 741 aaPredicted RBP21.25■□□□□ 0.99
HDDC3-205ENST00000559898 ARHGEF10LQ9HCE6 1279 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 COLQQ9Y215 455 aaPredicted RBP21.25■□□□□ 0.99
HDDC3-205ENST00000559898 TACC3Q9Y6A5 838 aa21.25■□□□□ 0.99
HDDC3-205ENST00000559898 ROBO3Q96MS0 1386 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 ZNFX1Q9P2E3 1918 aaKnown RBP21.24■□□□□ 0.99
HDDC3-205ENST00000559898 IGHDP01880 384 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 XRCC5P13010 732 aaKnown RBP21.24■□□□□ 0.99
HDDC3-205ENST00000559898 ZKSCAN1P17029 563 aaPredicted RBP21.24■□□□□ 0.99
HDDC3-205ENST00000559898 RGS2P41220 211 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 MAP2K5Q13163 448 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 HDAC1Q13547 482 aaPredicted RBP21.24■□□□□ 0.99
HDDC3-205ENST00000559898 HABP4Q5JVS0 413 aaKnown RBP21.24■□□□□ 0.99
HDDC3-205ENST00000559898 AMOTL1Q8IY63 956 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 DDRGK1Q96HY6 314 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 HMX1Q9NP08 348 aaPredicted RBP21.24■□□□□ 0.99
HDDC3-205ENST00000559898 INCENPQ9NQS7 918 aa21.24■□□□□ 0.99
HDDC3-205ENST00000559898 PATL2C9JE40 543 aaKnown RBP21.23■□□□□ 0.99
HDDC3-205ENST00000559898 ERC2O15083 957 aa21.23■□□□□ 0.99
HDDC3-205ENST00000559898 FLOT1O75955 427 aa21.23■□□□□ 0.99
HDDC3-205ENST00000559898 APPP05067 770 aa21.23■□□□□ 0.99
HDDC3-205ENST00000559898 ZFYP08048 801 aaPredicted RBP21.23■□□□□ 0.99
HDDC3-205ENST00000559898 TDO2P48775 406 aa21.23■□□□□ 0.99
HDDC3-205ENST00000559898 APBA2Q99767 749 aa21.23■□□□□ 0.99
HDDC3-205ENST00000559898 SPATC1LQ9H0A9 340 aa21.23■□□□□ 0.99
HDDC3-205ENST00000559898 IGKV6D-41A0A0C4DH26 115 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 RAD21O60216 631 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 ERCC3P19447 782 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 PDE1AP54750 535 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 GRB14Q14449 540 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 FAM83BQ5T0W9 1011 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 VPS53Q5VIR6 699 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 GIMAP6Q6P9H5 292 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 KANSL2Q9H9L4 492 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 CWC22Q9HCG8 908 aaKnown RBP21.22■□□□□ 0.99
HDDC3-205ENST00000559898 CEP290O15078 2479 aa21.22■□□□□ 0.99
HDDC3-205ENST00000559898 ZNF236Q9UL36 1845 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 SLC15A5A6NIM6 579 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 WDR46O15213 610 aaKnown RBP21.21■□□□□ 0.99
HDDC3-205ENST00000559898 COBLO75128 1261 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 CCNA1P78396 465 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 PLS1Q14651 629 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 TMEM132BQ14DG7 1078 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 LHX8Q68G74 356 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 B4GALNT3Q6L9W6 998 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 TRPV1Q8NER1 839 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 LPAR1Q92633 364 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 LNPKQ9C0E8 428 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 MKNK2Q9HBH9 465 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 HOXC10Q9NYD6 342 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 STAP2Q9UGK3 403 aa21.21■□□□□ 0.99
HDDC3-205ENST00000559898 CYP2C19P33261 490 aa21.2■□□□□ 0.98
HDDC3-205ENST00000559898 FAM47AQ5JRC9 791 aa21.2■□□□□ 0.98
HDDC3-205ENST00000559898 OGDHLQ9ULD0 1010 aa21.2■□□□□ 0.98
HDDC3-205ENST00000559898 IGHA2P01877 340 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms