RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 LPIN2Q92539 896 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 ZNF333Q96JL9 665 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 WRNIP1Q96S55 665 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 ZNF112Q9UJU3 913 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 SUGT1Q9Y2Z0 365 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 DAGLAQ9Y4D2 1042 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 PTCH2Q9Y6C5 1203 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.26□□□□□ -1.25
USP3-215ENST00000559771 PHIPQ8WWQ0 1821 aa7.26□□□□□ -1.25
USP3-215ENST00000559771 DOCK2Q92608 1830 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 TLR2O60603 784 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 IFIT1P09914 478 aaKnown RBP7.25□□□□□ -1.25
USP3-215ENST00000559771 NR5A1Q13285 461 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 PPIL2Q13356 520 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 ALDH1L2Q3SY69 923 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 ZMYM1Q5SVZ6 1142 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 FAM151AQ8WW52 585 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 PA2G4Q9UQ80 394 aaKnown RBP7.25□□□□□ -1.25
USP3-215ENST00000559771 CSADQ9Y600 493 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 PTPRFP10586 1907 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 MYH2Q9UKX2 1941 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 MAST3O60307 1309 aa7.25□□□□□ -1.25
USP3-215ENST00000559771 MGAMO43451 1857 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 HOXA2O43364 376 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 FRAT2O75474 233 aaPredicted RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 CIAO1O76071 339 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 CETPP11597 493 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 SLC5A1P13866 664 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 ADORA1P30542 326 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 PHKA1P46020 1223 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 LACTBP83111 547 aaPredicted RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 PPATQ06203 517 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 C17orf99Q6UX52 265 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 SH3BP5LQ7L8J4 393 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 WDR66Q8TBY9 1149 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 ZNF384Q8TF68 577 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 TSEN34Q9BSV6 310 aaKnown RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 SIL1Q9H173 461 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 ZFYVE28Q9HCC9 887 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 ZCCHC17Q9NP64 241 aaKnown RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 KCNH4Q9UQ05 1017 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 LRRFIP2Q9Y608 721 aaKnown RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 KIAA0100Q14667 2235 aaKnown RBP7.24□□□□□ -1.25
USP3-215ENST00000559771 SALL1Q9NSC2 1324 aa7.24□□□□□ -1.25
USP3-215ENST00000559771 SNRPNP63162 240 aaKnown RBP7.23□□□□□ -1.25
USP3-215ENST00000559771 TCP10Q12799 353 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 SNAPC2Q13487 334 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 ATP2B3Q16720 1220 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 HABP4Q5JVS0 413 aaKnown RBP7.23□□□□□ -1.25
USP3-215ENST00000559771 NOL9Q5SY16 702 aaKnown RBP7.23□□□□□ -1.25
USP3-215ENST00000559771 SH3TC2Q8TF17 1288 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 MEIS3Q99687 375 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 ZNF341Q9BYN7 854 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 COPRSQ9NQ92 184 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 SMC4Q9NTJ3 1288 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 CUEDC1Q9NWM3 386 aaPredicted RBP7.23□□□□□ -1.25
USP3-215ENST00000559771 TMOD2Q9NZR1 351 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 CPA4Q9UI42 421 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 NOB1Q9ULX3 412 aaKnown RBP7.23□□□□□ -1.25
USP3-215ENST00000559771 SZT2Q5T011 3432 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 GAKO14976 1311 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 AK9Q5TCS8 1911 aa7.23□□□□□ -1.25
USP3-215ENST00000559771 DOCK1Q14185 1865 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 PDHXO00330 501 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 WDHD1O75717 1129 aaPredicted RBP7.22□□□□□ -1.25
USP3-215ENST00000559771 UBTFL1P0CB47 393 aaPredicted RBP7.22□□□□□ -1.25
USP3-215ENST00000559771 BCRP11274 1271 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 RGS3P49796 1198 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 TIMM10P62072 90 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 RASGRF1Q13972 1273 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 MTFR1Q15390 333 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 SLC9C1Q4G0N8 1177 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 DCAF15Q66K64 600 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 CCDC102BQ68D86 513 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 ANKRD23Q86SG2 305 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 RETREG3Q86VR2 466 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 FAM174AQ8TBP5 190 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 SHISA4Q96DD7 197 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 IDI2Q9BXS1 227 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 DDX4Q9NQI0 724 aaKnown RBP7.22□□□□□ -1.25
USP3-215ENST00000559771 USP40Q9NVE5 1235 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 CEP126Q9P2H0 1117 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.22□□□□□ -1.25
USP3-215ENST00000559771 TNNQ9UQP3 1299 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 SIPA1L1O43166 1804 aa7.22□□□□□ -1.25
USP3-215ENST00000559771 DDTLA6NHG4 134 aaPredicted RBP7.21□□□□□ -1.26
USP3-215ENST00000559771 SEMA3EO15041 775 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 SPTLC1O15269 473 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 MYCP01106 439 aaPredicted RBP7.21□□□□□ -1.26
USP3-215ENST00000559771 LDHBP07195 334 aaKnown RBP7.21□□□□□ -1.26
USP3-215ENST00000559771 CYP2C8P10632 490 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 IL15P40933 162 aaPredicted RBP7.21□□□□□ -1.26
USP3-215ENST00000559771 RARSP54136 660 aaKnown RBP7.21□□□□□ -1.26
USP3-215ENST00000559771 RHBDL3P58872 404 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 KCNH2Q12809 1159 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 MTX1Q13505 466 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 ARID5BQ14865 1188 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 UBE2Q1Q7Z7E8 422 aa7.21□□□□□ -1.26
USP3-215ENST00000559771 ACDQ96AP0 544 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms