RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 TSEN34Q9BSV6 310 aaKnown RBP16.52■□□□□ 0.24
TMEM260-215ENST00000557626 FAM86C1Q9NVL1 165 aa16.52■□□□□ 0.24
TMEM260-215ENST00000557626 IFT57Q9NWB7 429 aa16.52■□□□□ 0.24
TMEM260-215ENST00000557626 COL4A4P53420 1690 aaPredicted RBP16.52■□□□□ 0.23
TMEM260-215ENST00000557626 ZBBXA8MT70 800 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 PDE8BO95263 885 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 ASNSP08243 561 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 IFIT1P09914 478 aaKnown RBP16.51■□□□□ 0.23
TMEM260-215ENST00000557626 ATP2A2P16615 1042 aaKnown RBP16.51■□□□□ 0.23
TMEM260-215ENST00000557626 CYP2C18P33260 490 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 ACLYP53396 1101 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 GNAI1P63096 354 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 TCF15Q12870 199 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 IER5LQ5T953 404 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 SLC5A4Q9NY91 659 aa16.51■□□□□ 0.23
TMEM260-215ENST00000557626 ZNF536O15090 1300 aa16.5■□□□□ 0.23
TMEM260-215ENST00000557626 ID4P47928 161 aa16.5■□□□□ 0.23
TMEM260-215ENST00000557626 GRB10Q13322 594 aa16.5■□□□□ 0.23
TMEM260-215ENST00000557626 FKBP5Q13451 457 aaPredicted RBP16.5■□□□□ 0.23
TMEM260-215ENST00000557626 PTCRAQ6ISU1 281 aaPredicted RBP16.5■□□□□ 0.23
TMEM260-215ENST00000557626 VGLL2Q8N8G2 317 aa16.5■□□□□ 0.23
TMEM260-215ENST00000557626 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.5■□□□□ 0.23
TMEM260-215ENST00000557626 KCNA5P22460 613 aa16.49■□□□□ 0.23
TMEM260-215ENST00000557626 TSPYL6Q8N831 410 aa16.49■□□□□ 0.23
TMEM260-215ENST00000557626 BTBD7Q9P203 1132 aa16.49■□□□□ 0.23
TMEM260-215ENST00000557626 VPS13AQ96RL7 3174 aa16.49■□□□□ 0.23
TMEM260-215ENST00000557626 DMDP11532 3685 aa16.49■□□□□ 0.23
TMEM260-215ENST00000557626 TPRP12270 2363 aaKnown RBP16.49■□□□□ 0.23
TMEM260-215ENST00000557626 TECTAO75443 2155 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 MOXD2PA6NHM9 499 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L15C9J2P7 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L13C9JLJ4 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L11C9JVI0 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L18D6R9N7 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L22D6RA61 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L17D6RBQ6 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L19D6RCP7 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L20D6RJB6 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 TLR3O15455 904 aaKnown RBP16.48■□□□□ 0.23
TMEM260-215ENST00000557626 STRNO43815 780 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 COBLO75128 1261 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 BTDP43251 543 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L24Q0WX57 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 FLIIQ13045 1269 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 PUM3Q15397 648 aaKnown RBP16.48■□□□□ 0.23
TMEM260-215ENST00000557626 LRRC24Q50LG9 513 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 USP17L2Q6R6M4 530 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 EMILIN3Q9NT22 766 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 HERC5Q9UII4 1024 aaKnown RBP16.48■□□□□ 0.23
TMEM260-215ENST00000557626 WDR87Q6ZQQ6 2873 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 CFAP47Q6ZTR5 3102 aa16.48■□□□□ 0.23
TMEM260-215ENST00000557626 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.47■□□□□ 0.23
TMEM260-215ENST00000557626 CCER2I3L3R5 266 aa16.47■□□□□ 0.23
TMEM260-215ENST00000557626 ADAMTS4O75173 837 aa16.47■□□□□ 0.23
TMEM260-215ENST00000557626 RUNDC1Q96C34 613 aa16.47■□□□□ 0.23
TMEM260-215ENST00000557626 GLT1D1Q96MS3 346 aa16.47■□□□□ 0.23
TMEM260-215ENST00000557626 NRBP1Q9UHY1 535 aa16.47■□□□□ 0.23
TMEM260-215ENST00000557626 ROBO3Q96MS0 1386 aa16.47■□□□□ 0.23
TMEM260-215ENST00000557626 SALL1Q9NSC2 1324 aa16.46■□□□□ 0.23
TMEM260-215ENST00000557626 GRXCR2A6NFK2 248 aa16.46■□□□□ 0.23
TMEM260-215ENST00000557626 RGS20O76081 388 aa16.46■□□□□ 0.23
TMEM260-215ENST00000557626 CDK7P50613 346 aa16.46■□□□□ 0.23
TMEM260-215ENST00000557626 DZIP1Q86YF9 867 aaKnown RBP16.46■□□□□ 0.23
TMEM260-215ENST00000557626 SLF2Q8IX21 1173 aa16.46■□□□□ 0.23
TMEM260-215ENST00000557626 LENG1Q96BZ8 264 aaPredicted RBP16.46■□□□□ 0.23
TMEM260-215ENST00000557626 MAML3Q96JK9 1138 aa16.46■□□□□ 0.23
TMEM260-215ENST00000557626 ELP1O95163 1332 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 GRM8O00222 908 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 LPXNO60711 386 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 NPM3O75607 178 aaKnown RBP16.45■□□□□ 0.22
TMEM260-215ENST00000557626 TAP1Q03518 808 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 KCNA10Q16322 511 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 PUS10Q3MIT2 529 aaKnown RBP16.45■□□□□ 0.22
TMEM260-215ENST00000557626 LBX2Q6XYB7 198 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 FAM126BQ8IXS8 530 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 ATOH1Q92858 354 aaPredicted RBP16.45■□□□□ 0.22
TMEM260-215ENST00000557626 VTI1AQ96AJ9 217 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 UPF3BQ9BZI7 483 aaKnown RBP16.45■□□□□ 0.22
TMEM260-215ENST00000557626 HIPK3Q9H422 1215 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 PLXNA3P51805 1871 aa16.45■□□□□ 0.22
TMEM260-215ENST00000557626 DMXL1Q9Y485 3027 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 A0A0U1RQG5 324 aaPredicted RBP16.44■□□□□ 0.22
TMEM260-215ENST00000557626 ARVCFO00192 962 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 AKR1A1P14550 325 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 FGFR2P21802 821 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 CALD1Q05682 793 aaKnown RBP16.44■□□□□ 0.22
TMEM260-215ENST00000557626 PKN1Q16512 942 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 CATSPERGQ6ZRH7 1159 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 MRS2Q9HD23 443 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 LMCD1Q9NZU5 365 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 ATRXP46100 2492 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 CHD6Q8TD26 2715 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 NCOR2Q9Y618 2525 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 KMT2EQ8IZD2 1858 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 SYNRGQ9UMZ2 1314 aa16.44■□□□□ 0.22
TMEM260-215ENST00000557626 CCL23P55773 120 aa16.43■□□□□ 0.22
TMEM260-215ENST00000557626 JAG1P78504 1218 aa16.43■□□□□ 0.22
TMEM260-215ENST00000557626 ZP2Q05996 745 aa16.43■□□□□ 0.22
TMEM260-215ENST00000557626 ZYXQ15942 572 aaKnown RBP16.43■□□□□ 0.22
TMEM260-215ENST00000557626 SUGP1Q8IWZ8 645 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms