RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GABPAQ06546 454 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 GALNT17Q6IS24 598 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 FSIP1Q8NA03 581 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 PHF20Q9BVI0 1012 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 IDI2Q9BXS1 227 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 USP25Q9UHP3 1055 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 PCDHA7Q9UN72 937 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 CLIC4Q9Y696 253 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 SLX4Q8IY92 1834 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 PPIP5K2O43314 1243 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 NMT2O60551 498 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 PLEKHA8P1O95397 391 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 CMA1P23946 247 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 POLD1P28340 1107 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 MMP14P50281 582 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 PKN1Q16512 942 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 PFKFB3Q16875 520 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-229ENST00000557348 APOBEC3HQ6NTF7 200 aaKnown RBP14.52□□□□□ -0.09
SHMT2-229ENST00000557348 CDC42EP5Q6NZY7 148 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 CCDC148Q8NFR7 591 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 FUCA2Q9BTY2 467 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 STX8Q9UNK0 236 aa14.52□□□□□ -0.09
SHMT2-229ENST00000557348 V9GY48 417 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-229ENST00000557348 COL2A1P02458 1487 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-229ENST00000557348 CDK5RAP2Q96SN8 1893 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 ECM29Q5VYK3 1845 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 hCG_1984214I3L0E3 225 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 CUTAO60888 179 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 NR1I2O75469 434 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 GUCY1A2P33402 732 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 TRAPPC10P48553 1259 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 PICALMQ13492 652 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 AOC3Q16853 763 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 CCDC82Q8N4S0 544 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 ZNF713Q8N859 430 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-229ENST00000557348 CCDC12Q8WUD4 166 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-229ENST00000557348 SPZ1Q9BXG8 430 aa14.51□□□□□ -0.09
SHMT2-229ENST00000557348 GOLGA6L6A8MZA4 724 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 BTBD18B2RXH4 712 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 SCNN1DP51172 638 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 EVX2Q03828 476 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 SRBD1Q8N5C6 995 aaKnown RBP14.5□□□□□ -0.09
SHMT2-229ENST00000557348 ENGASEQ8NFI3 743 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 TIGD1Q96MW7 591 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 TMEM47Q9BQJ4 181 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 FTOQ9C0B1 505 aaKnown RBP eCLIP14.5□□□□□ -0.09
SHMT2-229ENST00000557348 GJB4Q9NTQ9 266 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 HDAC9Q9UKV0 1011 aa14.5□□□□□ -0.09
SHMT2-229ENST00000557348 MYH1P12882 1939 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 ENTPD3O75355 529 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 PARP1P09874 1014 aaKnown RBP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 NOLC1Q14978 699 aaKnown RBP eCLIP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 PTPAQ15257 358 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 SLC4A8Q2Y0W8 1093 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 TPRNQ4KMQ1 711 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 KIAA0825Q8IV33 1275 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 SLC44A5Q8NCS7 719 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 FAM237AA0A1B0GTK4 181 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 PALM3A6NDB9 673 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 C21orf2O43822 256 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 ZSCAN20P17040 1043 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 RBM5P52756 815 aaKnown RBP eCLIP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 ASPRV1Q53RT3 343 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 CREBRFQ8IUR6 639 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 FMR1NBQ8N0W7 255 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 KRI1Q8N9T8 703 aaKnown RBP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 ZNF579Q8NAF0 562 aaKnown RBP14.49□□□□□ -0.09
SHMT2-229ENST00000557348 FAM200AQ8TCP9 573 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 CCDC34Q96HJ3 373 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 TMOD2Q9NZR1 351 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 PI4KBQ9UBF8 816 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 MAD2L2Q9UI95 211 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 KCNJ14Q9UNX9 436 aa14.49□□□□□ -0.09
SHMT2-229ENST00000557348 KIF13BQ9NQT8 1826 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 TRIM75PA6NK02 468 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 TTLL1O95922 423 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 TYRO3Q06418 890 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 SNW1Q13573 536 aaKnown RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 ZRSR1Q15695 479 aaKnown RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 AXDND1Q5T1B0 1012 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 FOXP4Q8IVH2 680 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 ELOA2Q8IYF1 753 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 CMTR1Q8N1G2 835 aaKnown RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 DAGLBQ8NCG7 672 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 TRIM34Q9BYJ4 488 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 MTFR1LQ9H019 292 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 DDX4Q9NQI0 724 aaKnown RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 MTMR4Q9NYA4 1195 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 VPS54Q9P1Q0 977 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 PIM2Q9P1W9 311 aa14.48□□□□□ -0.09
SHMT2-229ENST00000557348 ZNF219Q9P2Y4 722 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 HOOK1Q9UJC3 728 aaKnown RBP14.48□□□□□ -0.09
SHMT2-229ENST00000557348 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.48□□□□□ -0.093e-7■■□□□ 13.1
SHMT2-229ENST00000557348 IGKV6D-41A0A0C4DH26 115 aa14.47□□□□□ -0.09
SHMT2-229ENST00000557348 DPEP1P16444 411 aa14.47□□□□□ -0.09
SHMT2-229ENST00000557348 NLRP5P59047 1200 aa14.47□□□□□ -0.09
SHMT2-229ENST00000557348 DNTTIP2Q5QJE6 756 aaKnown RBP14.47□□□□□ -0.09
SHMT2-229ENST00000557348 CEP95Q96GE4 821 aa14.47□□□□□ -0.09
SHMT2-229ENST00000557348 GOLPH3LQ9H4A5 285 aa14.47□□□□□ -0.09
SHMT2-229ENST00000557348 CAMK4Q16566 473 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms