RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 USP17L20D6RJB6 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 TLR2O60603 784 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 KDM4AO75164 1064 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 CYP21A2P08686 494 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 USP17L24Q0WX57 530 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 PPP4R3BQ5MIZ7 849 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 SAMD1Q6SPF0 538 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 KRT23Q9C075 422 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 TANGO6Q9C0B7 1094 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 ASCC2Q9H1I8 757 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 RPAP3Q9H6T3 665 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 VCPKMTQ9H867 229 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 PRDM10Q9NQV6 1147 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 ISY1Q9ULR0 285 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 PLIN4Q96Q06 1357 aa13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 GREB1LQ9C091 1923 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-212ENST00000556767 CASP8AP2Q9UKL3 1982 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 HOXA7P31268 230 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 SP3Q02447 781 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 KIAA1755Q5JYT7 1200 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 RALYLQ86SE5 291 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 LPAR1Q92633 364 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 CHMP4CQ96CF2 233 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 ZKSCAN3Q9BRR0 538 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 CNNM2Q9H8M5 875 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 IL17RBQ9NRM6 502 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 MTMR7Q9Y216 660 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 GTF3C3Q9Y5Q9 886 aa13.51□□□□□ -0.25
CCDC88C-212ENST00000556767 F5H6K3 240 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 KLRC3Q07444 240 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 RNF20Q5VTR2 975 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 CATSPERGQ6ZRH7 1159 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 IQCA1Q86XH1 822 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 ANKRD13CQ8N6S4 541 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 NKX2-3Q8TAU0 364 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 ERO1AQ96HE7 468 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 P2RX7Q99572 595 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 MYH4Q9Y623 1939 aa13.5□□□□□ -0.25
CCDC88C-212ENST00000556767 CEP350Q5VT06 3117 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 E7EWF7 191 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 SLC27A2O14975 620 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 WDR46O15213 610 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 FLOT1O75955 427 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 REC8O95072 547 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 NDUFB10O96000 172 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 GCLCP48506 637 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 HERVK_113P62684 666 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 KIF22Q14807 665 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 NOM1Q5C9Z4 860 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 FAM83BQ5T0W9 1011 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 CREB3L3Q68CJ9 461 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 SLFN13Q68D06 897 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 C17orf99Q6UX52 265 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 NCOA7Q8NI08 942 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 CD99L2Q8TCZ2 262 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 MKL1Q969V6 931 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 NUP88Q99567 741 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 UBAC1Q9BSL1 405 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 PAGR1Q9BTK6 254 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 TCP11L1Q9NUJ3 509 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 ZSWIM5Q9P217 1185 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 TAF6LQ9Y6J9 622 aa13.49□□□□□ -0.25
CCDC88C-212ENST00000556767 ADGRA2Q96PE1 1338 aa13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 TOP1P11387 765 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 NT5C2P49902 561 aa13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 COG2Q14746 738 aa13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 NECTIN1Q15223 517 aa13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 CCDC178Q5BJE1 867 aa13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 STOX1Q6ZVD7 989 aa13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 ZSCAN10Q96SZ4 725 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-212ENST00000556767 BCRP11274 1271 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 MCCP23508 829 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 ARHGEF6Q15052 776 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 COL13A1Q5TAT6 717 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 CYB5R4Q7L1T6 521 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 CCAR1Q8IX12 1150 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 GMCL1P1Q8NEA9 526 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 GTF3C2Q8WUA4 911 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 TTC14Q96N46 770 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 TMEM47Q9BQJ4 181 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 HOXC10Q9NYD6 342 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 SYNPO2Q9UMS6 1093 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 TRIM17Q9Y577 477 aa13.47□□□□□ -0.25
CCDC88C-212ENST00000556767 TNKSO95271 1327 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 ERICH2A1L162 156 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 PEX10O60683 326 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 FMNL1O95466 1100 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 BMP3P12645 472 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 ZKSCAN1P17029 563 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 SLC1A4P43007 532 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 LACTBP83111 547 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 IKQ13123 557 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 FAM110CQ1W6H9 321 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 CCDC96Q2M329 555 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 CHST3Q7LGC8 479 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 CTU1Q7Z7A3 348 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 DGKHQ86XP1 1220 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 GPRC5AQ8NFJ5 357 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 KAT14Q9H8E8 782 aa13.46□□□□□ -0.25
CCDC88C-212ENST00000556767 FBXO28Q9NVF7 368 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms