RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TMEM67Q5HYA8 995 aa8.79□□□□□ -1
PRPF39-209ENST00000556353 ZNF648Q5T619 568 aaPredicted RBP8.79□□□□□ -1
PRPF39-209ENST00000556353 DNAJC25-GNG10A0A024R161 153 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 RAC2P15153 192 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 LTKP29376 864 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 EGR3Q06889 387 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 RALGPS1Q5JS13 557 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 EHMT1Q9H9B1 1298 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.78□□□□□ -1
PRPF39-209ENST00000556353 NISCHQ9Y2I1 1504 aa8.78□□□□□ -1
PRPF39-209ENST00000556353 MCM4P33991 863 aa8.77□□□□□ -1.01
PRPF39-209ENST00000556353 ZNF76P36508 570 aa8.77□□□□□ -1.01
PRPF39-209ENST00000556353 LDLRAD1Q5T700 205 aa8.77□□□□□ -1.01
PRPF39-209ENST00000556353 HOMEZQ8IX15 550 aa8.77□□□□□ -1.01
PRPF39-209ENST00000556353 REXO1Q8N1G1 1221 aaKnown RBP8.77□□□□□ -1.01
PRPF39-209ENST00000556353 LIN37Q96GY3 246 aaPredicted RBP8.77□□□□□ -1.01
PRPF39-209ENST00000556353 ADAMTS10Q9H324 1103 aa8.77□□□□□ -1.01
PRPF39-209ENST00000556353 UBOX5O94941 541 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 ZNF165P49910 485 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 HK2P52789 917 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 RNF4P78317 190 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 MLANAQ16655 118 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 CLEC16AQ2KHT3 1053 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 OVOS1Q6IE37 1185 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 MPZL3Q6UWV2 235 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 GK5Q6ZS86 529 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 KIAA0825Q8IV33 1275 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 KSR1Q8IVT5 923 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 NKD1Q969G9 470 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 SPON2Q9BUD6 331 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 NT5C1AQ9BXI3 368 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 BACH2Q9BYV9 841 aa8.76□□□□□ -1.01
PRPF39-209ENST00000556353 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.76□□□□□ -1.01
PRPF39-209ENST00000556353 ASCC2Q9H1I8 757 aaPredicted RBP8.76□□□□□ -1.01
PRPF39-209ENST00000556353 RBM47A0AV96 593 aaKnown RBP8.75□□□□□ -1.01
PRPF39-209ENST00000556353 CLCQ05315 142 aa8.75□□□□□ -1.01
PRPF39-209ENST00000556353 CDCP2Q5VXM1 449 aa8.75□□□□□ -1.01
PRPF39-209ENST00000556353 ABHD4Q8TB40 342 aa8.75□□□□□ -1.01
PRPF39-209ENST00000556353 SYTL4Q96C24 671 aaPredicted RBP8.75□□□□□ -1.01
PRPF39-209ENST00000556353 VWCEQ96DN2 955 aa8.75□□□□□ -1.01
PRPF39-209ENST00000556353 SLC38A3Q99624 504 aa8.75□□□□□ -1.01
PRPF39-209ENST00000556353 PCDHA11Q9Y5I1 949 aa8.75□□□□□ -1.01
PRPF39-209ENST00000556353 SHISA3A0PJX4 238 aa8.74□□□□□ -1.01
PRPF39-209ENST00000556353 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.74□□□□□ -1.01
PRPF39-209ENST00000556353 PKN1Q16512 942 aa8.74□□□□□ -1.01
PRPF39-209ENST00000556353 LRRFIP1Q32MZ4 808 aaKnown RBP8.74□□□□□ -1.01
PRPF39-209ENST00000556353 NLRC3Q7RTR2 1065 aa8.74□□□□□ -1.01
PRPF39-209ENST00000556353 SLITRK4Q8IW52 837 aa8.74□□□□□ -1.01
PRPF39-209ENST00000556353 MYLIPQ8WY64 445 aa8.74□□□□□ -1.01
PRPF39-209ENST00000556353 CNNM2Q9H8M5 875 aa8.74□□□□□ -1.01
PRPF39-209ENST00000556353 METTL5Q9NRN9 209 aaKnown RBP8.74□□□□□ -1.01
PRPF39-209ENST00000556353 BTBD11A6QL63 1104 aa8.73□□□□□ -1.01
PRPF39-209ENST00000556353 POLR2BP30876 1174 aaKnown RBP8.73□□□□□ -1.01
PRPF39-209ENST00000556353 RAD51AP2Q09MP3 1159 aa8.73□□□□□ -1.01
PRPF39-209ENST00000556353 NMIQ13287 307 aaPredicted RBP8.73□□□□□ -1.01
PRPF39-209ENST00000556353 DHX38Q92620 1227 aaKnown RBP8.73□□□□□ -1.01
PRPF39-209ENST00000556353 ATG4CQ96DT6 458 aa8.73□□□□□ -1.01
PRPF39-209ENST00000556353 EAF1Q96JC9 268 aaPredicted RBP8.73□□□□□ -1.01
PRPF39-209ENST00000556353 FAM84AQ96KN4 292 aa8.73□□□□□ -1.01
PRPF39-209ENST00000556353 HPXP02790 462 aa8.72□□□□□ -1.01
PRPF39-209ENST00000556353 CCNFP41002 786 aa8.72□□□□□ -1.01
PRPF39-209ENST00000556353 ERVFC1P60507 584 aa8.72□□□□□ -1.01
PRPF39-209ENST00000556353 FANCCQ00597 558 aa8.72□□□□□ -1.01
PRPF39-209ENST00000556353 USP48Q86UV5 1035 aa8.72□□□□□ -1.01
PRPF39-209ENST00000556353 ENOX1Q8TC92 643 aaKnown RBP8.72□□□□□ -1.01
PRPF39-209ENST00000556353 ZGLP1P0C6A0 271 aa8.71□□□□□ -1.02
PRPF39-209ENST00000556353 MESP2Q0VG99 397 aa8.71□□□□□ -1.02
PRPF39-209ENST00000556353 ZNF124Q15973 351 aa8.71□□□□□ -1.02
PRPF39-209ENST00000556353 NBPF12Q5TAG4 269 aaPredicted RBP8.71□□□□□ -1.02
PRPF39-209ENST00000556353 PRR23BQ6ZRT6 265 aa8.71□□□□□ -1.02
PRPF39-209ENST00000556353 OXR1Q8N573 874 aa8.71□□□□□ -1.02
PRPF39-209ENST00000556353 PDZD8Q8NEN9 1154 aa8.71□□□□□ -1.02
PRPF39-209ENST00000556353 MEIS3P2A8K0S8 358 aa8.7□□□□□ -1.02
PRPF39-209ENST00000556353 CLEC3AO75596 197 aa8.7□□□□□ -1.02
PRPF39-209ENST00000556353 SYTL5Q8TDW5 730 aaPredicted RBP8.7□□□□□ -1.02
PRPF39-209ENST00000556353 ANTXR1Q9H6X2 564 aa8.7□□□□□ -1.02
PRPF39-209ENST00000556353 NME1P15531 152 aaKnown RBP8.69□□□□□ -1.02
PRPF39-209ENST00000556353 TEKQ02763 1124 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 FZD5Q13467 585 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 NBPF9Q3BBW0 867 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 ZNF394Q53GI3 561 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 RNF34Q969K3 372 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 HDAC8Q9BY41 377 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 PCDHGB7Q9Y5F8 929 aa8.69□□□□□ -1.02
PRPF39-209ENST00000556353 FITM1A5D6W6 292 aa8.68□□□□□ -1.02
PRPF39-209ENST00000556353 JAG1P78504 1218 aa8.68□□□□□ -1.02
PRPF39-209ENST00000556353 DUSP4Q13115 394 aa8.68□□□□□ -1.02
PRPF39-209ENST00000556353 ZNF655Q8N720 491 aaPredicted RBP8.68□□□□□ -1.02
PRPF39-209ENST00000556353 DAGLBQ8NCG7 672 aa8.68□□□□□ -1.02
PRPF39-209ENST00000556353 BHLHE22Q8NFJ8 381 aaPredicted RBP8.68□□□□□ -1.02
PRPF39-209ENST00000556353 DIRC2Q96SL1 478 aa8.68□□□□□ -1.02
PRPF39-209ENST00000556353 TNFRSF10CO14798 259 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 IMPDH2P12268 514 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 TRHRP34981 398 aaPredicted RBP8.67□□□□□ -1.02
PRPF39-209ENST00000556353 RNF111Q6ZNA4 994 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 TMC3Q7Z5M5 1100 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 SPPL2CQ8IUH8 684 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 LILRA2Q8N149 483 aa8.67□□□□□ -1.02
PRPF39-209ENST00000556353 ZNF512BQ96KM6 892 aaPredicted RBP8.67□□□□□ -1.02
PRPF39-209ENST00000556353 PPP1R16BQ96T49 567 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms