RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PDE4DQ08499 809 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 DOK7Q18PE1 504 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 USP17L2Q6R6M4 530 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 FAM196AQ6ZSG2 479 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 NELFBQ8WX92 580 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 SEPT11Q9NVA2 429 aaKnown RBP16.75■□□□□ 0.27
CUX1-215ENST00000556210 SLIT1O75093 1534 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 PPP6R2O75170 966 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 CALML3P27482 149 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 CDC25BP30305 580 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 RBM28Q9NW13 759 aaKnown RBP16.74■□□□□ 0.27
CUX1-215ENST00000556210 SOWAHDA6NJG2 315 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 SEC31AO94979 1220 aaKnown RBP16.74■□□□□ 0.27
CUX1-215ENST00000556210 CASP14P31944 242 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 EVX2Q03828 476 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 ADGRA1Q86SQ6 560 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 SRRTQ9BXP5 876 aaKnown RBP16.74■□□□□ 0.27
CUX1-215ENST00000556210 ANKRD2Q9GZV1 360 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 TEX33O43247 280 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 AKR1B10O60218 316 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 FAM84BQ96KN1 310 aaPredicted RBP16.74■□□□□ 0.27
CUX1-215ENST00000556210 TCEAL9Q9UHQ7 104 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 KLRF2D3W0D1 207 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 TOM1O60784 492 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 SPA17Q15506 151 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 C3orf67Q6ZVT6 689 aa16.74■□□□□ 0.27
CUX1-215ENST00000556210 CCDC43Q96MW1 224 aaKnown RBP16.74■□□□□ 0.27
CUX1-215ENST00000556210 ARHGAP6O43182 974 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 PARP1P09874 1014 aaKnown RBP16.73■□□□□ 0.27
CUX1-215ENST00000556210 PPP2R3AQ06190 1150 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 UBE4AQ14139 1066 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 MTF1Q14872 753 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 CCDC40Q4G0X9 1142 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 ST7Q9NRC1 585 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 ERLIN1O75477 346 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 RNASE9P60153 205 aaKnown RBP16.73■□□□□ 0.27
CUX1-215ENST00000556210 TBC1D8BQ0IIM8 1120 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 FMR1Q06787 632 aaKnown RBP eCLIP16.73■□□□□ 0.27
CUX1-215ENST00000556210 PAK1Q13153 545 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 MSL1Q68DK7 614 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 BLIDQ8IZY5 108 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 CSGALNACT2Q8N6G5 542 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 RRP36Q96EU6 259 aaKnown RBP16.73■□□□□ 0.27
CUX1-215ENST00000556210 GDAQ9Y2T3 454 aa16.73■□□□□ 0.27
CUX1-215ENST00000556210 LUC7L2Q9Y383 392 aaKnown RBP16.73■□□□□ 0.27
CUX1-215ENST00000556210 TMEM266Q2M3C6 531 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 WWC2Q6AWC2 1192 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 EYA3Q99504 573 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 FOXP1Q9H334 677 aaPredicted RBP16.72■□□□□ 0.27
CUX1-215ENST00000556210 BMP15O95972 392 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 PTPROQ16827 1216 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 RESP18Q5W5W9 173 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 ZNF34Q8IZ26 560 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 ACBD3Q9H3P7 528 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 SMCO2A6NFE2 343 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 ZBTB22O15209 634 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 STAG2Q8N3U4 1231 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 CCDC148Q8NFR7 591 aa16.72■□□□□ 0.27
CUX1-215ENST00000556210 MST1RQ04912 1400 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 EIF3JO75822 258 aaKnown RBP16.71■□□□□ 0.27
CUX1-215ENST00000556210 ST5P78524 1137 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 RBL2Q08999 1139 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 NEK11Q8NG66 645 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 C6orf50Q9HD87 102 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 USP21Q9UK80 565 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 PTPREP23469 700 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 CTAGE1Q96RT6 745 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 RNF26Q9BY78 433 aaPredicted RBP16.71■□□□□ 0.27
CUX1-215ENST00000556210 CDHR2Q9BYE9 1310 aa16.71■□□□□ 0.27
CUX1-215ENST00000556210 ENC1O14682 589 aa16.71■□□□□ 0.26
CUX1-215ENST00000556210 CTR9Q6PD62 1173 aa16.71■□□□□ 0.26
CUX1-215ENST00000556210 ACRBPQ8NEB7 543 aa16.71■□□□□ 0.26
CUX1-215ENST00000556210 RUFY1Q96T51 708 aa16.71■□□□□ 0.26
CUX1-215ENST00000556210 POLD4Q9HCU8 107 aa16.71■□□□□ 0.26
CUX1-215ENST00000556210 FAM207AQ9NSI2 230 aaPredicted RBP16.71■□□□□ 0.26
CUX1-215ENST00000556210 CTDP1Q9Y5B0 961 aaPredicted RBP16.71■□□□□ 0.26
CUX1-215ENST00000556210 BTDP43251 543 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 GNAQP50148 359 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 ZYXQ15942 572 aaKnown RBP16.7■□□□□ 0.26
CUX1-215ENST00000556210 E4F1Q66K89 784 aaPredicted RBP16.7■□□□□ 0.26
CUX1-215ENST00000556210 TOGARAM2Q6ZUX3 1019 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 CLEC10AQ8IUN9 316 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 TXLNBQ8N3L3 684 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 SH3RF3Q8TEJ3 882 aaPredicted RBP16.7■□□□□ 0.26
CUX1-215ENST00000556210 STAG1Q8WVM7 1258 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 MORC2Q9Y6X9 1032 aaPredicted RBP16.7■□□□□ 0.26
CUX1-215ENST00000556210 CTAGE9A4FU28 777 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 SLC16A2P36021 539 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 GSTO1P78417 241 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 CCZ1BP86790 482 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 CCZ1P86791 482 aaPredicted RBP16.7■□□□□ 0.26
CUX1-215ENST00000556210 CCDC122Q5T0U0 273 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 SARM1Q6SZW1 724 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 TXNRD3Q86VQ6 643 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 SLC39A2Q9NP94 309 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 TRIM49BA6NDI0 452 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 TUBB4AP04350 444 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 CLCN6P51797 869 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 CUL4BQ13620 913 aa16.7■□□□□ 0.26
CUX1-215ENST00000556210 NELFCDQ8IXH7 590 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms