RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 KREMEN1Q96MU8 473 aa7.49□□□□□ -1.21
SCFD1-217ENST00000555953 RNF32Q9H0A6 362 aa7.49□□□□□ -1.21
SCFD1-217ENST00000555953 DCP1AQ9NPI6 582 aaPredicted RBP7.49□□□□□ -1.21
SCFD1-217ENST00000555953 PDIA4P13667 645 aaKnown RBP7.48□□□□□ -1.21
SCFD1-217ENST00000555953 GARTP22102 1010 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 LTKP29376 864 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 SNAP47Q5SQN1 464 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 LCNL1Q6ZST4 164 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 GOLM1Q8NBJ4 401 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 C19orf44Q9H6X5 657 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 MRS2Q9HD23 443 aa7.48□□□□□ -1.21
SCFD1-217ENST00000555953 SHISA3A0PJX4 238 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 MINDY4BA8MYZ0 360 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 NFIBO00712 420 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 TIGD5Q53EQ6 642 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 PDZD8Q8NEN9 1154 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 CCDC74BQ96LY2 380 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 ASPNQ9BXN1 380 aa7.47□□□□□ -1.21
SCFD1-217ENST00000555953 PWP1Q13610 501 aa7.46□□□□□ -1.22
SCFD1-217ENST00000555953 MPP2Q14168 576 aa7.46□□□□□ -1.22
SCFD1-217ENST00000555953 REC114Q7Z4M0 266 aa7.46□□□□□ -1.22
SCFD1-217ENST00000555953 ZSCAN18Q8TBC5 510 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-217ENST00000555953 KIF2CQ99661 725 aa7.46□□□□□ -1.22
SCFD1-217ENST00000555953 RBM47A0AV96 593 aaKnown RBP7.45□□□□□ -1.22
SCFD1-217ENST00000555953 FAM196AQ6ZSG2 479 aa7.45□□□□□ -1.22
SCFD1-217ENST00000555953 PHACTR4Q8IZ21 702 aa7.45□□□□□ -1.22
SCFD1-217ENST00000555953 CD320Q9NPF0 282 aa7.45□□□□□ -1.22
SCFD1-217ENST00000555953 KBTBD4Q9NVX7 518 aa7.45□□□□□ -1.22
SCFD1-217ENST00000555953 NPIPB6E9PJ23 425 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 TLR3O15455 904 aaKnown RBP7.44□□□□□ -1.22
SCFD1-217ENST00000555953 TMEM253P0C7T8 217 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 MED14OSP0DP75 135 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 TEKQ02763 1124 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 ATG14Q6ZNE5 492 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 ERMP1Q7Z2K6 904 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 OXR1Q8N573 874 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 VWCEQ96DN2 955 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 COPRSQ9NQ92 184 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 EBF1Q9UH73 591 aa7.44□□□□□ -1.22
SCFD1-217ENST00000555953 FITM1A5D6W6 292 aa7.43□□□□□ -1.22
SCFD1-217ENST00000555953 ETV2O00321 342 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-217ENST00000555953 ZSCAN22P10073 491 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-217ENST00000555953 LILRA2Q8N149 483 aa7.43□□□□□ -1.22
SCFD1-217ENST00000555953 DHX38Q92620 1227 aaKnown RBP7.43□□□□□ -1.22
SCFD1-217ENST00000555953 GLDCP23378 1020 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 NR0B2Q15466 257 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 KCNA10Q16322 511 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 FBXL19Q6PCT2 694 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 SLC26A8Q96RN1 970 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 KRTAP4-9Q9BYQ8 210 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 KCNQ5Q9NR82 932 aa7.42□□□□□ -1.22
SCFD1-217ENST00000555953 TCAF2A6NFQ2 919 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 SLC22A31A6NKX4 558 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 RGS13O14921 159 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 UBOX5O94941 541 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 GBP1P32455 592 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 CLEC16AQ2KHT3 1053 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 ARSHQ5FYA8 562 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 SIAH1Q8IUQ4 282 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 LRRC3Q9BY71 257 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 BRMS1Q9HCU9 246 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 ZNF281Q9Y2X9 895 aa7.41□□□□□ -1.22
SCFD1-217ENST00000555953 KRTAP9-7A8MTY7 169 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 NMIQ13287 307 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 CCDC27Q2M243 656 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 CWF19L2Q2TBE0 894 aaKnown RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 IRF2BP1Q8IU81 584 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 LINC01599Q8WXQ3 324 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 KCNN1Q92952 543 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 SYTL4Q96C24 671 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 INTS4Q96HW7 963 aaKnown RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 G6PC3Q9BUM1 346 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 HDAC8Q9BY41 377 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 SLC6A17Q9H1V8 727 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 CWC22Q9HCG8 908 aaKnown RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 SMG5Q9UPR3 1016 aaKnown RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 YBX2Q9Y2T7 364 aaKnown RBP7.4□□□□□ -1.22
SCFD1-217ENST00000555953 PCDHB14Q9Y5E9 798 aa7.4□□□□□ -1.22
SCFD1-217ENST00000555953 GREM1O60565 184 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 ERCC3P19447 782 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 EIF4A3P38919 411 aaKnown RBP7.39□□□□□ -1.23
SCFD1-217ENST00000555953 CRKP46108 304 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 CHRNEQ04844 493 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 DUSP4Q13115 394 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 ANKS4BQ8N8V4 417 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 SHISA4Q96DD7 197 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 MCOLN1Q9GZU1 580 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 GMIPQ9P107 970 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 GPR160Q9UJ42 338 aa7.39□□□□□ -1.23
SCFD1-217ENST00000555953 ROBO2Q9HCK4 1378 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 MYOCOSA0A1B0GUC4 107 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 NOTOA8MTQ0 251 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 PSPNO60542 156 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 EFEMP2O95967 443 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 RAG1P15918 1043 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 POLR2BP30876 1174 aaKnown RBP7.38□□□□□ -1.23
SCFD1-217ENST00000555953 ITGAEP38570 1179 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 GALK1P51570 392 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 LINC00310P59036 64 aa7.38□□□□□ -1.23
SCFD1-217ENST00000555953 CHMP4BP1P59074 171 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms