RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 LSG1Q9H089 658 aaKnown RBP19.35■□□□□ 0.69
SYNE3-204ENST00000555759 INTS9Q9NV88 658 aaKnown RBP19.35■□□□□ 0.69
SYNE3-204ENST00000555759 PABPN1LA6NDY0 278 aaKnown RBP19.35■□□□□ 0.69
SYNE3-204ENST00000555759 PPP6R2O75170 966 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 KRT25Q7Z3Z0 450 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 PHKBQ93100 1093 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 POGZQ7Z3K3 1410 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 FOXO3O43524 673 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 VSTM4Q8IW00 320 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 NBPF9Q3BBW0 867 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 FNBP4Q8N3X1 1017 aaPredicted RBP19.35■□□□□ 0.69
SYNE3-204ENST00000555759 POLR3EQ9NVU0 708 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 RCOR1Q9UKL0 485 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 SSX2IPQ9Y2D8 614 aa19.35■□□□□ 0.69
SYNE3-204ENST00000555759 SUDS3Q9H7L9 328 aaPredicted RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 GTPBP6O43824 516 aaPredicted RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 CASP14P31944 242 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 TTC19Q6DKK2 380 aaPredicted RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 RETREG2Q8NC44 543 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 GRK7Q8WTQ7 553 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 TYW1Q9NV66 732 aaKnown RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 PARP1P09874 1014 aaKnown RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 ST5P78524 1137 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 ITIH3Q06033 890 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 CC2D1AQ6P1N0 951 aaPredicted RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 ABCB6Q9NP58 842 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 AGTPBP1Q9UPW5 1226 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 URB2Q14146 1524 aaKnown RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 MRPL12P52815 198 aaKnown RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 COPB1P53618 953 aaKnown RBP19.34■□□□□ 0.69
SYNE3-204ENST00000555759 TCP11Q8WWU5 503 aa19.34■□□□□ 0.69
SYNE3-204ENST00000555759 TRIM37O94972 964 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 BCRP11274 1271 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 ZBTB17Q13105 803 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 LRRC23Q53EV4 343 aaPredicted RBP19.33■□□□□ 0.69
SYNE3-204ENST00000555759 AFAP1L2Q8N4X5 818 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 BLZF1Q9H2G9 400 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 SBNO1A3KN83 1393 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 DNMT1P26358 1616 aaKnown RBP19.33■□□□□ 0.69
SYNE3-204ENST00000555759 PLCG2P16885 1265 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 RPGRQ92834 1020 aaKnown RBP19.33■□□□□ 0.69
SYNE3-204ENST00000555759 PANX2Q96RD6 677 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 GLT8D2Q9H1C3 349 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 SCOCQ9UIL1 159 aa19.33■□□□□ 0.69
SYNE3-204ENST00000555759 SLC4A8Q2Y0W8 1093 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 DPCR1Q3MIW9 517 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 MIGA1Q8NAN2 632 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 GSDMAQ96QA5 445 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 MCM9Q9NXL9 1143 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 PPP1R9AQ9ULJ8 1098 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 NNTQ13423 1086 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 CABP7Q86V35 215 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 CCDC13Q8IYE1 715 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 METTL22Q9BUU2 404 aaPredicted RBP19.33■□□□□ 0.68
SYNE3-204ENST00000555759 LRWD1Q9UFC0 647 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 FAF1Q9UNN5 650 aaPredicted RBP19.33■□□□□ 0.68
SYNE3-204ENST00000555759 USP19O94966 1318 aa19.33■□□□□ 0.68
SYNE3-204ENST00000555759 IRX5P78411 483 aaPredicted RBP19.32■□□□□ 0.68
SYNE3-204ENST00000555759 SLC39A14Q15043 492 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 COG7P83436 770 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 NONOQ15233 471 aaKnown RBP eCLIP19.32■□□□□ 0.68
SYNE3-204ENST00000555759 KMT5BQ4FZB7 885 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 EYA1Q99502 592 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 SF3A3Q12874 501 aaKnown RBP eCLIP19.32■□□□□ 0.686e-9■■■■■ 59.3
SYNE3-204ENST00000555759 WDR44Q5JSH3 913 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 HMGB1P1B2RPK0 211 aaPredicted RBP19.32■□□□□ 0.68
SYNE3-204ENST00000555759 CCNT1O60563 726 aaKnown RBP19.32■□□□□ 0.68
SYNE3-204ENST00000555759 PPARDQ03181 441 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 EMBQ6PCB8 327 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 MIER3Q7Z3K6 550 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 KLHL29Q96CT2 875 aa19.32■□□□□ 0.68
SYNE3-204ENST00000555759 WHAMMQ8TF30 809 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 MRRFQ96E11 262 aaKnown RBP19.31■□□□□ 0.68
SYNE3-204ENST00000555759 PCDHA5Q9Y5H7 936 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 TIMM10P62072 90 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 MAP4K1Q92918 833 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 NLRC4Q9NPP4 1024 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 KCNJ14Q9UNX9 436 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 SLC39A6Q13433 755 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 TRMT1LQ7Z2T5 733 aaKnown RBP19.31■□□□□ 0.68
SYNE3-204ENST00000555759 ZMYM6O95789 1325 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 CD109Q6YHK3 1445 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 BBOF1Q8ND07 529 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 TRIM6Q9C030 488 aaPredicted RBP19.31■□□□□ 0.68
SYNE3-204ENST00000555759 C19orf44Q9H6X5 657 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 NR1D1P20393 614 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 TAF11Q15544 211 aa19.31■□□□□ 0.68
SYNE3-204ENST00000555759 NOP53Q9NZM5 478 aaKnown RBP19.31■□□□□ 0.68
SYNE3-204ENST00000555759 TBC1D8O95759 1140 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 PDE1CQ14123 709 aaPredicted RBP19.3■□□□□ 0.68
SYNE3-204ENST00000555759 RILPQ96NA2 401 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 TSPYL2Q9H2G4 693 aaPredicted RBP19.3■□□□□ 0.68
SYNE3-204ENST00000555759 VPS37BQ9H9H4 285 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 SKIP12755 728 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 PHBP35232 272 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 SAAL1Q96ER3 474 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 KRT5P13647 590 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 IL9RQ01113 521 aa19.3■□□□□ 0.68
SYNE3-204ENST00000555759 LSM14BQ9BX40 385 aaKnown RBP19.3■□□□□ 0.68
SYNE3-204ENST00000555759 TXLNGQ9NUQ3 528 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms