RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CPA1P15085 419 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 ZYXQ15942 572 aaKnown RBP12.82□□□□□ -0.36
SHMT2-218ENST00000555213 SH3D19Q5HYK7 790 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 CLEC10AQ8IUN9 316 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 NKX2-3Q8TAU0 364 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 ACER1Q8TDN7 264 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 LPAR1Q92633 364 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 ZIC5Q96T25 663 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 PARK7Q99497 189 aaKnown RBP12.82□□□□□ -0.36
SHMT2-218ENST00000555213 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.82□□□□□ -0.365e-8■■■□□ 18.8
SHMT2-218ENST00000555213 INCENPQ9NQS7 918 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 TCP11L1Q9NUJ3 509 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 SAGE1Q9NXZ1 904 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 AGTPBP1Q9UPW5 1226 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 SLC45A1Q9Y2W3 748 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 TMX2Q9Y320 296 aa12.82□□□□□ -0.36
SHMT2-218ENST00000555213 GREB1LQ9C091 1923 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-218ENST00000555213 PHIPQ8WWQ0 1821 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 ERICH2A1L162 156 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 RAD21O60216 631 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 SLC34A2O95436 690 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 NEK4P51957 841 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 C12orf42Q96LP6 360 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 UPF3BQ9BZI7 483 aaKnown RBP12.81□□□□□ -0.36
SHMT2-218ENST00000555213 VCPKMTQ9H867 229 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 CLIP2Q9UDT6 1046 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 LOC285556D6RIA3 1793 aa12.81□□□□□ -0.36
SHMT2-218ENST00000555213 BTBD19C9JJ37 291 aa12.8□□□□□ -0.36
SHMT2-218ENST00000555213 PDHXO00330 501 aa12.8□□□□□ -0.36
SHMT2-218ENST00000555213 IGF2BP3O00425 579 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 HMGB1P09429 215 aaKnown RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 TOP1P11387 765 aaKnown RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 VCAM1P19320 739 aa12.8□□□□□ -0.36
SHMT2-218ENST00000555213 MCM5P33992 734 aa12.8□□□□□ -0.36
SHMT2-218ENST00000555213 IRX3P78415 501 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 TAF1CQ15572 869 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 LRRC47Q8N1G4 583 aaKnown RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 ZSCAN10Q96SZ4 725 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 ALDH8A1Q9H2A2 487 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-218ENST00000555213 WBP1LQ9NX94 342 aa12.8□□□□□ -0.36
SHMT2-218ENST00000555213 TNKSO95271 1327 aa12.8□□□□□ -0.36
SHMT2-218ENST00000555213 A0A1W2PRG0 241 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 WDR46O15213 610 aaKnown RBP12.79□□□□□ -0.36
SHMT2-218ENST00000555213 NMT2O60551 498 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 OSBPP22059 807 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 PSMA5P28066 241 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 EXOSC10Q01780 885 aaKnown RBP12.79□□□□□ -0.36
SHMT2-218ENST00000555213 MOGSQ13724 837 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 RUFY3Q7L099 469 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 DGKHQ86XP1 1220 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 FAM43AQ8N2R8 423 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 GMCL1P1Q8NEA9 526 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 SMCR8Q8TEV9 937 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-218ENST00000555213 MKL1Q969V6 931 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 JAKMIP1Q96N16 626 aaKnown RBP12.79□□□□□ -0.36
SHMT2-218ENST00000555213 PTPN18Q99952 460 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 TANGO6Q9C0B7 1094 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 ZFYVE28Q9HCC9 887 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 IL17RBQ9NRM6 502 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 EMILIN3Q9NT22 766 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 RNF186Q9NXI6 227 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 ZSWIM5Q9P217 1185 aa12.79□□□□□ -0.36
SHMT2-218ENST00000555213 ISY1Q9ULR0 285 aaKnown RBP12.79□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L15C9J2P7 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L13C9JLJ4 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L11C9JVI0 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L18D6R9N7 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L22D6RA61 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L17D6RBQ6 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L19D6RCP7 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L20D6RJB6 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 TRPA1O75762 1119 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 USP17L24Q0WX57 530 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 TREML2Q5T2D2 321 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 IFIT1BQ5T764 474 aaKnown RBP12.78□□□□□ -0.36
SHMT2-218ENST00000555213 GPAT2Q6NUI2 795 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 SIAH1Q8IUQ4 282 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 MB21D2Q8IYB1 491 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-218ENST00000555213 SPICE1Q8N0Z3 855 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 GTF3C2Q8WUA4 911 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-218ENST00000555213 NEK1Q96PY6 1258 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 ZKSCAN3Q9BRR0 538 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 MTA3Q9BTC8 594 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 RPAP3Q9H6T3 665 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-218ENST00000555213 KAT14Q9H8E8 782 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 PTPRFP10586 1907 aa12.78□□□□□ -0.36
SHMT2-218ENST00000555213 F5H6K3 240 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 IFIT3O14879 490 aaKnown RBP12.77□□□□□ -0.37
SHMT2-218ENST00000555213 PRC1O43663 620 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 NDUFB10O96000 172 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 CASTP20810 708 aaKnown RBP12.77□□□□□ -0.37
SHMT2-218ENST00000555213 RPS6KB1P23443 525 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 HOXA7P31268 230 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-218ENST00000555213 SLC1A4P43007 532 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 NOVP48745 357 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 FGD1P98174 961 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 KLRC3Q07444 240 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 CRHR2Q13324 411 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 DGKZQ13574 1117 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 BECN1Q14457 450 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms