RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 USP17L15C9J2P7 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L13C9JLJ4 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L11C9JVI0 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L18D6R9N7 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L22D6RA61 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L17D6RBQ6 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L19D6RCP7 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L20D6RJB6 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 IRX3P78415 501 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 USP17L24Q0WX57 530 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 RRP12Q5JTH9 1297 aaKnown RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 CATSPERGQ6ZRH7 1159 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 LPAR1Q92633 364 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 MAP4K1Q92918 833 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 MKL1Q969V6 931 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 RNF41Q9H4P4 317 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 RPAP3Q9H6T3 665 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 IL17RBQ9NRM6 502 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 TOMM22Q9NS69 142 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 U3KPZ7 1027 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 NEDD4P46934 1319 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 CTU1Q7Z7A3 348 aaKnown RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 LSG1Q9H089 658 aaKnown RBP16.82■□□□□ 0.28
SHMT2-217ENST00000555116 CLIP2Q9UDT6 1046 aa16.82■□□□□ 0.28
SHMT2-217ENST00000555116 NMT2O60551 498 aa16.81■□□□□ 0.28
SHMT2-217ENST00000555116 TTLL1O95922 423 aa16.81■□□□□ 0.28
SHMT2-217ENST00000555116 GCLCP48506 637 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-217ENST00000555116 NOVP48745 357 aa16.81■□□□□ 0.28
SHMT2-217ENST00000555116 HERVK_113P62684 666 aa16.81■□□□□ 0.28
SHMT2-217ENST00000555116 LACTBP83111 547 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-217ENST00000555116 POTEEQ6S8J3 1075 aa16.81■□□□□ 0.28
SHMT2-217ENST00000555116 SPICE1Q8N0Z3 855 aa16.81■□□□□ 0.28
SHMT2-217ENST00000555116 GOPCQ9HD26 462 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 TCP11L1Q9NUJ3 509 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 SYNPO2Q9UMS6 1093 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 A0A0G2JMZ2 1700 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 WDR46O15213 610 aaKnown RBP16.8■□□□□ 0.28
SHMT2-217ENST00000555116 CYP21A2P08686 494 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 CTGFP29279 349 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 KIAA1211Q6ZU35 1233 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 ANKRD13CQ8N6S4 541 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 ARHGAP39Q9C0H5 1083 aa16.8■□□□□ 0.28
SHMT2-217ENST00000555116 RBM8AQ9Y5S9 174 aaKnown RBP16.8■□□□□ 0.28
SHMT2-217ENST00000555116 COL11A1P12107 1806 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-217ENST00000555116 FAM110CQ1W6H9 321 aa16.79■□□□□ 0.28
SHMT2-217ENST00000555116 PPP4R3BQ5MIZ7 849 aa16.79■□□□□ 0.28
SHMT2-217ENST00000555116 OTOP1Q7RTM1 612 aa16.79■□□□□ 0.28
SHMT2-217ENST00000555116 TNS4Q8IZW8 715 aa16.79■□□□□ 0.28
SHMT2-217ENST00000555116 LRRC47Q8N1G4 583 aaKnown RBP16.79■□□□□ 0.28
SHMT2-217ENST00000555116 MCOLN1Q9GZU1 580 aa16.79■□□□□ 0.28
SHMT2-217ENST00000555116 MORF4L1Q9UBU8 362 aa16.79■□□□□ 0.28
SHMT2-217ENST00000555116 F5H6K3 240 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 NDUFB10O96000 172 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 NT5C2P49902 561 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 KLRC3Q07444 240 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 CASC1Q6TDU7 716 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 LBX2Q6XYB7 198 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 ESR2Q92731 530 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 TANGO6Q9C0B7 1094 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 TXNRD2Q9NNW7 524 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 RBPJLQ9UBG7 517 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 TRIM17Q9Y577 477 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 TAF6LQ9Y6J9 622 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 SPDYE16A6NNV3 312 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-217ENST00000555116 B4E1Z4 1266 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 PEX10O60683 326 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 KIF22Q14807 665 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 GMCL1P1Q8NEA9 526 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 GTF3C2Q8WUA4 911 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-217ENST00000555116 EFCC1Q9HA90 598 aa16.78■□□□□ 0.28
SHMT2-217ENST00000555116 KDM4AO75164 1064 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 CNMDO75829 334 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 COG2Q14746 738 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 FAM83BQ5T0W9 1011 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 TRIM47Q96LD4 638 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 NUP88Q99567 741 aaPredicted RBP16.77■□□□□ 0.27
SHMT2-217ENST00000555116 ANO2Q9NQ90 1003 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 STX8Q9UNK0 236 aa16.77■□□□□ 0.27
SHMT2-217ENST00000555116 RAD21O60216 631 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 ECM2O94769 699 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-217ENST00000555116 PSMC4P43686 418 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 PKN2Q16513 984 aaKnown RBP16.76■□□□□ 0.27
SHMT2-217ENST00000555116 RCSD1Q6JBY9 416 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 KRT23Q9C075 422 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 CNNM2Q9H8M5 875 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 HOXC10Q9NYD6 342 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 ZSWIM5Q9P217 1185 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 DSG3P32926 999 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 ARHGEF6Q15052 776 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 NECTIN1Q15223 517 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 SLFN13Q68D06 897 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 STOX1Q6ZVD7 989 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 FBXO28Q9NVF7 368 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 RABGAP1Q9Y3P9 1069 aa16.76■□□□□ 0.27
SHMT2-217ENST00000555116 MYPNQ86TC9 1320 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 PLXNB2O15031 1838 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 FLOT1O75955 427 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 TOP1P11387 765 aaKnown RBP16.75■□□□□ 0.27
SHMT2-217ENST00000555116 ERVK-9P63128 1117 aa16.75■□□□□ 0.27
SHMT2-217ENST00000555116 ERVK-24P63145 666 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms