RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 MAP1SQ66K74 1059 aaPredicted RBP16.74■□□□□ 0.27
SHOX2-206ENST00000554685 ARMC9Q7Z3E5 817 aa16.74■□□□□ 0.27
SHOX2-206ENST00000554685 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.74■□□□□ 0.27
SHOX2-206ENST00000554685 MYL10Q9BUA6 226 aa16.74■□□□□ 0.27
SHOX2-206ENST00000554685 AS3MTQ9HBK9 375 aa16.74■□□□□ 0.27
SHOX2-206ENST00000554685 CSADQ9Y600 493 aa16.74■□□□□ 0.27
SHOX2-206ENST00000554685 UTRNP46939 3433 aa16.74■□□□□ 0.27
SHOX2-206ENST00000554685 USP17L5A8MUK1 530 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 USP2O75604 605 aaPredicted RBP16.73■□□□□ 0.27
SHOX2-206ENST00000554685 PDIA4P13667 645 aaKnown RBP16.73■□□□□ 0.27
SHOX2-206ENST00000554685 RXRAP19793 462 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 MAP3K9P80192 1104 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 ST3GAL1Q11201 340 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 GRM4Q14833 912 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 ASPRV1Q53RT3 343 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 RAB11FIP4Q86YS3 637 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 SPRYD3Q8NCJ5 442 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 GMCL1P1Q8NEA9 526 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 LZTS2Q9BRK4 669 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 GPBP1L1Q9HC44 474 aaPredicted RBP16.73■□□□□ 0.27
SHOX2-206ENST00000554685 NCOA5Q9HCD5 579 aaKnown RBP16.73■□□□□ 0.27
SHOX2-206ENST00000554685 GOPCQ9HD26 462 aa16.73■□□□□ 0.27
SHOX2-206ENST00000554685 UNCXA6NJT0 531 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 PARP1P09874 1014 aaKnown RBP16.72■□□□□ 0.27
SHOX2-206ENST00000554685 POTEIP0CG38 1075 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 POTEJP0CG39 1038 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 IFNAR1P17181 557 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 INPP5BP32019 993 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 FKBP1BP68106 108 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 JAG1P78504 1218 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 TTLL12Q14166 644 aaPredicted RBP16.72■□□□□ 0.27
SHOX2-206ENST00000554685 MAP3K11Q16584 847 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 GPATCH4Q5T3I0 446 aaKnown RBP16.72■□□□□ 0.27
SHOX2-206ENST00000554685 CHADLQ6NUI6 762 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 CLEC10AQ8IUN9 316 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 CCDC144CPQ8IYA2 1237 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 TRIM22Q8IYM9 498 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 LRRC47Q8N1G4 583 aaKnown RBP16.72■□□□□ 0.27
SHOX2-206ENST00000554685 DCAF4Q8WV16 495 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 RBM27Q9P2N5 1060 aaKnown RBP16.72■□□□□ 0.27
SHOX2-206ENST00000554685 TMX2Q9Y320 296 aa16.72■□□□□ 0.27
SHOX2-206ENST00000554685 PTPDC1A2A3K4 754 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 SNHG28P0DPA3 235 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 PDCP20941 246 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 ADD1P35611 737 aaKnown RBP16.71■□□□□ 0.27
SHOX2-206ENST00000554685 SHROOM1Q2M3G4 852 aaPredicted RBP16.71■□□□□ 0.27
SHOX2-206ENST00000554685 ANKRD13AQ8IZ07 590 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 FAM184AQ8NB25 1140 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 NSUN7Q8NE18 718 aaKnown RBP16.71■□□□□ 0.27
SHOX2-206ENST00000554685 SMARCC2Q8TAQ2 1214 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 FEZ1Q99689 392 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 WDR18Q9BV38 432 aa16.71■□□□□ 0.27
SHOX2-206ENST00000554685 CIZ1Q9ULV3 898 aaPredicted RBP16.71■□□□□ 0.27
SHOX2-206ENST00000554685 POLR2AP24928 1970 aaKnown RBP16.7■□□□□ 0.26
SHOX2-206ENST00000554685 DOCK1Q14185 1865 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 PDHBP11177 359 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 SMARCA1P28370 1054 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 GJB2P29033 226 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 CDC27P30260 824 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 USP14P54578 494 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 AKAP17AQ02040 695 aaKnown RBP16.7■□□□□ 0.26
SHOX2-206ENST00000554685 PRKG1Q13976 671 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 SLFN13Q68D06 897 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 TMTC3Q6ZXV5 915 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 SIAH1Q8IUQ4 282 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 WASF1Q92558 559 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 ZKSCAN4Q969J2 545 aaPredicted RBP16.7■□□□□ 0.26
SHOX2-206ENST00000554685 GMCL1Q96IK5 515 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 FAM217BQ9NTX9 383 aaPredicted RBP16.7■□□□□ 0.26
SHOX2-206ENST00000554685 STK36Q9NRP7 1315 aa16.7■□□□□ 0.26
SHOX2-206ENST00000554685 PALM3A6NDB9 673 aaPredicted RBP16.69■□□□□ 0.26
SHOX2-206ENST00000554685 F5H6K3 240 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 PTPRAP18433 802 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 KLRC3Q07444 240 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 SSRP1Q08945 709 aaKnown RBP16.69■□□□□ 0.26
SHOX2-206ENST00000554685 CCDC96Q2M329 555 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 RNF26Q9BY78 433 aaPredicted RBP16.69■□□□□ 0.26
SHOX2-206ENST00000554685 KIAA1683Q9H0B3 1180 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 VCPKMTQ9H867 229 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 MTMR7Q9Y216 660 aa16.69■□□□□ 0.26
SHOX2-206ENST00000554685 USP17L10C9JJH3 530 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 KLRF2D3W0D1 207 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 RAD21O60216 631 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 FMNL1O95466 1100 aaPredicted RBP16.68■□□□□ 0.26
SHOX2-206ENST00000554685 CTDNEP1O95476 244 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 SLC1A4P43007 532 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 ZNF543Q08ER8 600 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 VGLL4Q14135 290 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 NTRK3Q16288 839 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 DLK2Q6UY11 383 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.68■□□□□ 0.26
SHOX2-206ENST00000554685 ZNF280CQ8ND82 737 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 ACER1Q8TDN7 264 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 LPAR1Q92633 364 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 ORC3Q9UBD5 711 aaPredicted RBP16.68■□□□□ 0.26
SHOX2-206ENST00000554685 MAD2L2Q9UI95 211 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 ATAD5Q96QE3 1844 aa16.68■□□□□ 0.26
SHOX2-206ENST00000554685 PAPPA2Q9BXP8 1791 aa16.67■□□□□ 0.26
SHOX2-206ENST00000554685 A0A1W2PRG0 241 aa16.67■□□□□ 0.26
SHOX2-206ENST00000554685 C19orf81C9J6K1 198 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms