RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ZNF165P49910 485 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 MAPK8IP2Q13387 824 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-212ENST00000554467 RBM43Q6ZSC3 357 aaKnown RBP13.42□□□□□ -0.26
SHMT2-212ENST00000554467 ZNF771Q7L3S4 317 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-212ENST00000554467 FLAD1Q8NFF5 587 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 ZNF202O95125 648 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 SLC15A2Q16348 729 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 TBC1D22AQ8WUA7 517 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 PYCARDQ9ULZ3 195 aa13.42□□□□□ -0.26
SHMT2-212ENST00000554467 DDAH1O94760 285 aa13.41□□□□□ -0.26
SHMT2-212ENST00000554467 EYA3Q99504 573 aa13.41□□□□□ -0.26
SHMT2-212ENST00000554467 TAF3Q5VWG9 929 aa13.41□□□□□ -0.26
SHMT2-212ENST00000554467 PRPF3O43395 683 aaKnown RBP13.41□□□□□ -0.26
SHMT2-212ENST00000554467 USP40Q9NVE5 1235 aa13.41□□□□□ -0.26
SHMT2-212ENST00000554467 RBM28Q9NW13 759 aaKnown RBP13.41□□□□□ -0.26
SHMT2-212ENST00000554467 FAM205AQ6ZU69 1335 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 A0A1W2PQ27 194 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 A0A1W2PQ64 194 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 A0A1W2PQD8 194 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 RBM5P52756 815 aaKnown RBP eCLIP13.4□□□□□ -0.26
SHMT2-212ENST00000554467 NCBP1Q09161 790 aaKnown RBP13.4□□□□□ -0.26
SHMT2-212ENST00000554467 NFIAQ12857 509 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 SLC35G1Q2M3R5 365 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 RASGRP4Q8TDF6 673 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 TMEM47Q9BQJ4 181 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 NAV1Q8NEY1 1877 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 LTBP1Q14766 1721 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 ADAMTSL1Q8N6G6 1762 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 FAM196BA6NMK8 535 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 CALM1P0DP23 149 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 CALM2P0DP24 149 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 CALM3P0DP25 149 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 RCAN1P53805 252 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 TCP10Q12799 353 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 NAA30Q147X3 362 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-212ENST00000554467 AOC3Q16853 763 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 UVSSAQ2YD98 709 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 TMC4Q7Z404 712 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 ZFPM1Q8IX07 1006 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 KIAA1524Q8TCG1 905 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 GAKO14976 1311 aa13.4□□□□□ -0.26
SHMT2-212ENST00000554467 USP49Q70CQ1 688 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 PDILTQ8N807 584 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 CAMKK2Q96RR4 588 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 FOXP1Q9H334 677 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-212ENST00000554467 OGFRQ9NZT2 677 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 CDK5RAP2Q96SN8 1893 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 CMA1P23946 247 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 SYKP43405 635 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 USP17L2Q6R6M4 530 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 CEP95Q96GE4 821 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 PHF20Q9BVI0 1012 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 VAT1LQ9HCJ6 419 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 STK32BQ9NY57 414 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 FOXN1O15353 648 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 C21orf2O43822 256 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 KRT2P35908 639 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 NLRP5P59047 1200 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 ZNF174Q15697 407 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 HOMER1Q86YM7 354 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 LRRC37AA6NMS7 1700 aa13.39□□□□□ -0.27
SHMT2-212ENST00000554467 NPY5RQ15761 445 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 SHROOM1Q2M3G4 852 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-212ENST00000554467 C16orf86Q6ZW13 317 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 SLF2Q8IX21 1173 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 FEZ1Q99689 392 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 MAD2L2Q9UI95 211 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 SNED1Q8TER0 1413 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 SCG2P13521 617 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 PLCG2P16885 1265 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 XBP1P17861 261 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 PNOCQ13519 176 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 DPCR1Q3MIW9 517 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 TYW1BQ6NUM6 668 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 CDC42EP5Q6NZY7 148 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 PIK3AP1Q6ZUJ8 805 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 CYTH3O43739 400 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 ECE2O60344 883 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 ATP2B2Q01814 1243 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 DGKHQ86XP1 1220 aa13.38□□□□□ -0.27
SHMT2-212ENST00000554467 LRRC47Q8N1G4 583 aaKnown RBP13.38□□□□□ -0.27
SHMT2-212ENST00000554467 FAM163AQ96GL9 167 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-212ENST00000554467 ROBO3Q96MS0 1386 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 TNS1Q9HBL0 1735 aaKnown RBP13.37□□□□□ -0.27
SHMT2-212ENST00000554467 PPP2R5BQ15173 497 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 STX1AQ16623 288 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 LONRF3Q496Y0 759 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 HEATR3Q7Z4Q2 680 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 GRAMD1CQ8IYS0 662 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 JMYQ8N9B5 988 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 KRI1Q8N9T8 703 aaKnown RBP13.37□□□□□ -0.27
SHMT2-212ENST00000554467 MYH1P12882 1939 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 FRMPD2Q68DX3 1309 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-212ENST00000554467 PPP6R2O75170 966 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 AKR1B1P15121 316 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 KIF5BP33176 963 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 RILPL1Q5EBL4 403 aa13.37□□□□□ -0.27
SHMT2-212ENST00000554467 APOBEC3HQ6NTF7 200 aaKnown RBP13.37□□□□□ -0.27
SHMT2-212ENST00000554467 UBA5Q9GZZ9 404 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms