RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PHF20Q9BVI0 1012 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 CABP5Q9NP86 173 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 PCDHB6Q9Y5E3 794 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 KIF13BQ9NQT8 1826 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 DDTLA6NHG4 134 aaPredicted RBP14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 CYTH3O43739 400 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 GRIN1Q05586 938 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 SLC39A14Q15043 492 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 SPECC1Q5M775 1068 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 ADALQ6DHV7 355 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 USP17L2Q6R6M4 530 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 ANKS1AQ92625 1134 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 TDRD3Q9H7E2 651 aaKnown RBP14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 TCP11L1Q9NUJ3 509 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 DDX19AQ9NUU7 478 aaKnown RBP14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 ZBTB12Q9Y330 459 aaPredicted RBP14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 MYH4Q9Y623 1939 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 PSME4Q14997 1843 aa14.7□□□□□ -0.06
VIPAS39-206ENST00000553888 LETM1O95202 739 aaPredicted RBP14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 GRM4Q14833 912 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 CCDC73Q6ZRK6 1079 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 LRRC47Q8N1G4 583 aaKnown RBP14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 KCNG4Q8TDN1 519 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 DNAJC18Q9H819 358 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 FAM198AQ9UFP1 575 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 SHMT1P34896 483 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 CCDC93Q567U6 631 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 SH3BP5LQ7L8J4 393 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 MRPS27Q92552 414 aaKnown RBP14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 SERPINB13Q9UIV8 391 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 TYRO3Q06418 890 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 TYW1BQ6NUM6 668 aa14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 FOXP1Q9H334 677 aaPredicted RBP14.69□□□□□ -0.06
VIPAS39-206ENST00000553888 SCG2P13521 617 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 FAM160A1Q05DH4 1040 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 FMR1NBQ8N0W7 255 aaPredicted RBP14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 LARGE2Q8N3Y3 721 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 PRMT6Q96LA8 375 aaPredicted RBP14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 ZNF287Q9HBT7 754 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 PSMD14O00487 310 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 KIF5BP33176 963 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 R3HDM1Q15032 1099 aaKnown RBP14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 CFAP100Q494V2 611 aa14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 FRMPD2Q68DX3 1309 aaPredicted RBP14.68□□□□□ -0.06
VIPAS39-206ENST00000553888 USP17L5A8MUK1 530 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 MPHOSPH10O00566 681 aaKnown RBP14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 PFKFB3Q16875 520 aaPredicted RBP14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 SHC4Q6S5L8 630 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 ZSCAN29Q8IWY8 852 aaPredicted RBP14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 PFKFB1P16118 471 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 KRT2P35908 639 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 RBM43Q6ZSC3 357 aaKnown RBP14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 RASGRP4Q8TDF6 673 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 SLC16A10Q8TF71 515 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 UBA5Q9GZZ9 404 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 VAT1LQ9HCJ6 419 aa14.67□□□□□ -0.06
VIPAS39-206ENST00000553888 PALM3A6NDB9 673 aaPredicted RBP14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 CCDC192P0DO97 292 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 ATP2B2Q01814 1243 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 CC2D2BQ6DHV5 1058 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 RGS22Q8NE09 1264 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 SUPT20HQ8NEM7 779 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 KLRF2D3W0D1 207 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 KINO60870 393 aaKnown RBP14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 NLRP5P59047 1200 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 ANO6Q4KMQ2 910 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 HOMER1Q86YM7 354 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 MTMR4Q9NYA4 1195 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 CLIP2Q9UDT6 1046 aa14.66□□□□□ -0.06
VIPAS39-206ENST00000553888 A0A1W2PQ27 194 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 A0A1W2PQ64 194 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 A0A1W2PQD8 194 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 CLRN2A0PK11 232 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 XBP1P17861 261 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 PLCB2Q00722 1185 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 TNFRSF25Q93038 417 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 USP25Q9UHP3 1055 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 SCAF8Q9UPN6 1271 aaKnown RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 BRCA1P38398 1863 aaKnown RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 PSDA5PKW4 1024 aaPredicted RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 FKBP1AP62942 108 aaKnown RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 WWC2Q6AWC2 1192 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 HEATR3Q7Z4Q2 680 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 RTKN2Q8IZC4 609 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 SERPINA10Q9UK55 444 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 GREB1LQ9C091 1923 aaPredicted RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 SHTN1A0MZ66 631 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 AP5Z1O43299 807 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 TOP1P11387 765 aaKnown RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 PIK3AP1Q6ZUJ8 805 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 LUZP1Q86V48 1076 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 ZFP91Q96JP5 570 aaPredicted RBP14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 DNAJC25Q9H1X3 360 aa14.65□□□□□ -0.06
VIPAS39-206ENST00000553888 HLA-DOAP06340 250 aa14.64□□□□□ -0.07
VIPAS39-206ENST00000553888 PARP1P09874 1014 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-206ENST00000553888 CCDC173Q0VFZ6 552 aa14.64□□□□□ -0.07
VIPAS39-206ENST00000553888 CCDC178Q5BJE1 867 aa14.64□□□□□ -0.07
VIPAS39-206ENST00000553888 PPP1R9BQ96SB3 815 aa14.64□□□□□ -0.07
VIPAS39-206ENST00000553888 PSMD1Q99460 953 aa14.64□□□□□ -0.07
VIPAS39-206ENST00000553888 IGKV6D-41A0A0C4DH26 115 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms