RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 HELLSQ9NRZ9 838 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 GJD2Q9UKL4 321 aa12.28□□□□□ -0.44
CCDC88C-206ENST00000553437 ZSWIM8A7E2V4 1837 aa12.27□□□□□ -0.44
CCDC88C-206ENST00000553437 IGKV6D-41A0A0C4DH26 115 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 A0A0D9SFI3 127 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 EEF2P13639 858 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 PDE4AP27815 886 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 GRK4P32298 578 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 IRF5Q13568 498 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 VPS53Q5VIR6 699 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 LBX2Q6XYB7 198 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 GTF3C2Q8WUA4 911 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 NACAP1Q9BZK3 213 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 RPAP3Q9H6T3 665 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 VCPKMTQ9H867 229 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 RABGAP1Q9Y3P9 1069 aa12.27□□□□□ -0.45
CCDC88C-206ENST00000553437 SPDYE16A6NNV3 312 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 TRIM6-TRIM34B2RNG4 842 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 ERVK-9P63128 1117 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 ERVK-24P63145 666 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 PPARAQ07869 468 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 NMIQ13287 307 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 MTFR1Q15390 333 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 ALX1Q15699 326 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 MCMDC2Q4G0Z9 681 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 PXYLP1Q8TE99 480 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 LPAR1Q92633 364 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 RILPL2Q969X0 211 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 COA7Q96BR5 231 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 NAPBQ9H115 298 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 PORCNQ9H237 461 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 MKNK2Q9HBH9 465 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 ARHGEF10LQ9HCE6 1279 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 TACC3Q9Y6A5 838 aa12.26□□□□□ -0.45
CCDC88C-206ENST00000553437 PRDM1O75626 825 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 MYCP01106 439 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 EN2P19622 333 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 SDSP20132 328 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 COG2Q14746 738 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 ZNF589Q86UQ0 364 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 SPICE1Q8N0Z3 855 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 SLAIN1Q8ND83 568 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 PAGR1Q9BTK6 254 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 TMEM106CQ9BVX2 250 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 SH2D4AQ9H788 454 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 BTBD7Q9P203 1132 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 NYAP2Q9P242 653 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 MYH7P12883 1935 aa12.25□□□□□ -0.45
CCDC88C-206ENST00000553437 ADCY3O60266 1144 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 ELNP15502 786 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 MAPK4P31152 587 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 ATP2B2Q01814 1243 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 SZT2Q5T011 3432 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 ZNF444Q8N0Y2 327 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 USP6NLQ92738 828 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 ZNF287Q9HBT7 754 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 INCENPQ9NQS7 918 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 HOXC10Q9NYD6 342 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 ANAPC4Q9UJX5 808 aa12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC88C-206ENST00000553437 BAZ2AQ9UIF9 1905 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 WDR46O15213 610 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 FGAP02671 866 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 FGRP09769 529 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 HSPD1P10809 573 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 CTDSPL2Q05D32 466 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 PDE4BQ07343 736 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 MORN1Q5T089 497 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 GPR142Q7Z601 462 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 NEDD1Q8NHV4 660 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 MKL1Q969V6 931 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 TANGO6Q9C0B7 1094 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 MTMR4Q9NYA4 1195 aa12.23□□□□□ -0.45
CCDC88C-206ENST00000553437 PLIN4Q96Q06 1357 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 CCDC171Q6TFL3 1326 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 INHAP05111 366 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 SLC3A2P08195 630 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 CCL5P13501 91 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 GSPT1P15170 499 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 CCNA1P78396 465 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 TFAP4Q01664 338 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 FAM47AQ5JRC9 791 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 PLEKHH3Q7Z736 793 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 ATG4CQ96DT6 458 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 CEP95Q96GE4 821 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 GOPCQ9HD26 462 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 FBXO28Q9NVF7 368 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 BIN2Q9UBW5 565 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 CLIP2Q9UDT6 1046 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 ADAMTS5Q9UNA0 930 aa12.22□□□□□ -0.45
CCDC88C-206ENST00000553437 ZMYM6O95789 1325 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 F5H6K3 240 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 FLOT1O75955 427 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 GJB1P08034 283 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 TSPY3P0CV98 308 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 TSPY8P0CW00 308 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 XRCC5P13010 732 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 CYP2B6P20813 491 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 UBXN2AP68543 259 aa12.21□□□□□ -0.45
CCDC88C-206ENST00000553437 KLRC3Q07444 240 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms