RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FAM200AQ8TCP9 573 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 STX8Q9UNK0 236 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 CAVIN2O95810 425 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 TOP1P11387 765 aaKnown RBP30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 AOC3Q16853 763 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 CEP131Q9UPN4 1083 aa30.3■■■□□ 2.44
CCDC88C-205ENST00000553403 PALM3A6NDB9 673 aaPredicted RBP30.29■■■□□ 2.44
CCDC88C-205ENST00000553403 SH3GLB2Q9NR46 395 aa30.29■■■□□ 2.44
CCDC88C-205ENST00000553403 ADAMTSL1Q8N6G6 1762 aa30.28■■■□□ 2.44
CCDC88C-205ENST00000553403 TTLL6Q8N841 843 aa30.28■■■□□ 2.44
CCDC88C-205ENST00000553403 SCN9AQ15858 1988 aa30.28■■■□□ 2.44
CCDC88C-205ENST00000553403 FAM43AQ8N2R8 423 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 STAG2Q8N3U4 1231 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 HLA-DOAP06340 250 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 PFKFB1P16118 471 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 NPY5RQ15761 445 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 HS1BP3Q53T59 392 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 KIAA0825Q8IV33 1275 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 FAM177A1Q8N128 213 aaPredicted RBP30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 KRI1Q8N9T8 703 aaKnown RBP30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 TNFRSF25Q93038 417 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 TIGD1Q96MW7 591 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 CABP5Q9NP86 173 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 SERPINB13Q9UIV8 391 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 SERPINA10Q9UK55 444 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 HPSEQ9Y251 543 aa30.27■■■□□ 2.44
CCDC88C-205ENST00000553403 YY1P25490 414 aa30.26■■■□□ 2.43
CCDC88C-205ENST00000553403 CCDC93Q567U6 631 aa30.26■■■□□ 2.43
CCDC88C-205ENST00000553403 RESP18Q5W5W9 173 aa30.26■■■□□ 2.43
CCDC88C-205ENST00000553403 RTKN2Q8IZC4 609 aa30.26■■■□□ 2.43
CCDC88C-205ENST00000553403 CEP95Q96GE4 821 aa30.26■■■□□ 2.43
CCDC88C-205ENST00000553403 EHD4Q9H223 541 aa30.26■■■□□ 2.43
CCDC88C-205ENST00000553403 C21orf2O43822 256 aa30.25■■■□□ 2.43
CCDC88C-205ENST00000553403 NPM3O75607 178 aaKnown RBP30.25■■■□□ 2.43
CCDC88C-205ENST00000553403 ZNF202O95125 648 aa30.25■■■□□ 2.43
CCDC88C-205ENST00000553403 ANO6Q4KMQ2 910 aa30.25■■■□□ 2.43
CCDC88C-205ENST00000553403 SHC4Q6S5L8 630 aa30.25■■■□□ 2.43
CCDC88C-205ENST00000553403 NOL7Q9UMY1 257 aaKnown RBP30.25■■■□□ 2.43
CCDC88C-205ENST00000553403 IGKV6D-41A0A0C4DH26 115 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 PPIP5K2O43314 1243 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 CALML3P27482 149 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 SMARCA1P28370 1054 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 NLRP5P59047 1200 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 GPR162Q16538 588 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 SDF4Q9BRK5 362 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 IDI2Q9BXS1 227 aa30.24■■■□□ 2.43
CCDC88C-205ENST00000553403 BMP15O95972 392 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 PTPREP23469 700 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 PSMD1Q99460 953 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 SPZ1Q9BXG8 430 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 PCDHB6Q9Y5E3 794 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 TRIM75PA6NK02 468 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 STX1AQ16623 288 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 DHX36Q9H2U1 1008 aaKnown RBP30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 MTMR4Q9NYA4 1195 aa30.23■■■□□ 2.43
CCDC88C-205ENST00000553403 PARP1P09874 1014 aaKnown RBP30.22■■■□□ 2.43
CCDC88C-205ENST00000553403 SYKP43405 635 aa30.22■■■□□ 2.43
CCDC88C-205ENST00000553403 ZNF579Q8NAF0 562 aaKnown RBP30.22■■■□□ 2.43
CCDC88C-205ENST00000553403 FBXO2Q9UK22 296 aaPredicted RBP30.22■■■□□ 2.43
CCDC88C-205ENST00000553403 CBX8Q9HC52 389 aa30.21■■■□□ 2.43
CCDC88C-205ENST00000553403 AKR1B1P15121 316 aa30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 SHMT1P34896 483 aa30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 NFIAQ12857 509 aa30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 SLC35G1Q2M3R5 365 aa30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 CLIC6Q96NY7 704 aa30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 USP25Q9UHP3 1055 aa30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 SRPRBQ9Y5M8 271 aaKnown RBP30.2■■■□□ 2.43
CCDC88C-205ENST00000553403 KLRF2D3W0D1 207 aa30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 TRAPPC10P48553 1259 aa30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 RBM5P52756 815 aaKnown RBP eCLIP30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 PPP4R3BQ5MIZ7 849 aa30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 GALNT17Q6IS24 598 aa30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 VPS33BQ9H267 617 aa30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 ANO10Q9NW15 660 aa30.2■■■□□ 2.42
CCDC88C-205ENST00000553403 KIF13BQ9NQT8 1826 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 MYH8P13535 1937 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 YDJCA8MPS7 323 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 CYTH3O43739 400 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 DPEP1P16444 411 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 KCNA3P22001 575 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 EARS2Q5JPH6 523 aaKnown RBP30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 CCDC148Q8NFR7 591 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 NLGN2Q8NFZ4 835 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 PIBF1Q8WXW3 757 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 CCDC17Q96LX7 622 aa30.19■■■□□ 2.42
CCDC88C-205ENST00000553403 VEGFAP15692 232 aaPredicted RBP30.18■■■□□ 2.42
CCDC88C-205ENST00000553403 DNAJC25Q9H1X3 360 aa30.18■■■□□ 2.42
CCDC88C-205ENST00000553403 KIAA1468Q9P260 1216 aa30.18■■■□□ 2.42
CCDC88C-205ENST00000553403 PSME4Q14997 1843 aa30.18■■■□□ 2.42
CCDC88C-205ENST00000553403 FAM205CA6NFA0 338 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 ZNF165P49910 485 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 DAGLBQ8NCG7 672 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 FAM13BQ9NYF5 915 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 PCDHA4Q9UN74 947 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 ELOA2Q8IYF1 753 aaPredicted RBP30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 BLIDQ8IZY5 108 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 FAM198AQ9UFP1 575 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 MTMR7Q9Y216 660 aa30.17■■■□□ 2.42
CCDC88C-205ENST00000553403 ADCY5O95622 1261 aa30.16■■■□□ 2.42
CCDC88C-205ENST00000553403 TTLL1O95922 423 aa30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms