RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MAP3K9P80192 1104 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 TROAPQ12815 778 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 CUL4BQ13620 913 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 FAM47AQ5JRC9 791 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 TEX35Q5T0J7 233 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 IFIT1BQ5T764 474 aaKnown RBP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 FCHSD1Q86WN1 690 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 TMTC2Q8N394 836 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 AATFQ9NY61 560 aaKnown RBP eCLIP8.54□□□□□ -1.04
LIMA1-213ENST00000552720 DACH1Q9UI36 760 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 CEP131Q9UPN4 1083 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 JAG2Q9Y219 1238 aa8.54□□□□□ -1.04
LIMA1-213ENST00000552720 LAMB1P07942 1786 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 RTL9Q8NET4 1388 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 XDHP47989 1333 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 ERICH4A6NGS2 130 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 PPP1R3GB7ZBB8 358 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 TUBB4AP04350 444 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CDC25AP30304 524 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CCT6AP40227 531 aaKnown RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 PTGDRQ13258 359 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 BMS1Q14692 1282 aaKnown RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 ERFEQ4G0M1 354 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 SH3RF1Q7Z6J0 888 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 SRBD1Q8N5C6 995 aaKnown RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 IGSF22Q8N9C0 903 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 TRIML1Q8N9V2 468 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 AK7Q96M32 723 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 MRFAP1Q9Y605 127 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 MYH1P12882 1939 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 GOLGB1Q14789 3259 aaKnown RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CCDC88AQ3V6T2 1871 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 ZNF804BA4D1E1 1349 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 LOC102724428A0A0B4J2F2 783 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 EFCAB8A8MWE9 144 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 USP17L12C9JPN9 530 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 AKR1B15C9JRZ8 316 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 USP17L21D6R901 530 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 RNF225M0QZC1 329 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 PRPF3O43395 683 aaKnown RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 SASH3O75995 380 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CYP2D6P10635 497 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 ERCC5P28715 1186 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 SIK1P57059 783 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 PPP2R3AQ06190 1150 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 IL17AQ16552 155 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CTR9Q6PD62 1173 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CREBRFQ8IUR6 639 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CCDC12Q8WUD4 166 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 TNFRSF25Q93038 417 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 MTRQ99707 1265 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 ADD3Q9UEY8 706 aaKnown RBP8.53□□□□□ -1.04
LIMA1-213ENST00000552720 ANAPC4Q9UJX5 808 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CTNND2Q9UQB3 1225 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 MAPK8IP1Q9UQF2 711 aa8.53□□□□□ -1.04
LIMA1-213ENST00000552720 CNTNAP5Q8WYK1 1306 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 CASP14P31944 242 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 FXR1P51114 621 aaKnown RBP eCLIP8.52□□□□□ -1.05
LIMA1-213ENST00000552720 TTC38Q5R3I4 469 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 CDKAL1Q5VV42 579 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 SPATA1Q5VX52 437 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 KANK3Q6NY19 840 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 TMCO3Q6UWJ1 677 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 BICDL1Q6ZP65 573 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 PIK3AP1Q6ZUJ8 805 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 CATIPQ7Z7H3 387 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 SLC51AQ86UW1 340 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 CCDC24Q8N4L8 307 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 CELF1Q92879 486 aaKnown RBP8.52□□□□□ -1.05
LIMA1-213ENST00000552720 MCM7P33993 719 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 PBX1P40424 430 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 TMTC3Q6ZXV5 915 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 FAM84BQ96KN1 310 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-213ENST00000552720 ZCCHC17Q9NP64 241 aaKnown RBP8.52□□□□□ -1.05
LIMA1-213ENST00000552720 ADGRG1Q9Y653 693 aa8.52□□□□□ -1.05
LIMA1-213ENST00000552720 KIAA1551Q9HCM1 1747 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 RREB1Q92766 1687 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 POLR3GO15318 223 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 KCNQ2O43526 872 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 GYPCP04921 128 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 XBP1P17861 261 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 RCAN1P53805 252 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 PARP10Q53GL7 1025 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 IQCA1Q86XH1 822 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 ACRBPQ8NEB7 543 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 RASGRP4Q8TDF6 673 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 CCDC34Q96HJ3 373 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 MTA3Q9BTC8 594 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 SRRTQ9BXP5 876 aaKnown RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 VPS16Q9H269 839 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 TFCP2L1Q9NZI6 479 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 PUF60Q9UHX1 559 aaKnown RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 TBC1D8O95759 1140 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 CCDC175P0C221 793 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 E2F4Q16254 413 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 CC2D1AQ6P1N0 951 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 RSRC2Q7L4I2 434 aaKnown RBP8.51□□□□□ -1.05
LIMA1-213ENST00000552720 PPFIBP1Q86W92 1011 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 ANKRD18AQ8IVF6 992 aa8.51□□□□□ -1.05
LIMA1-213ENST00000552720 MARCH10Q8NA82 808 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 1251.1 ms