RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 NAA16Q6N069 864 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-222ENST00000551425 RNF180Q86T96 592 aa14.67□□□□□ -0.06
PTCH1-222ENST00000551425 ABRAQ8N0Z2 381 aa14.67□□□□□ -0.06
PTCH1-222ENST00000551425 NEUROD6Q96NK8 337 aa14.67□□□□□ -0.06
PTCH1-222ENST00000551425 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.67□□□□□ -0.06
PTCH1-222ENST00000551425 RPAP3Q9H6T3 665 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-222ENST00000551425 XPNPEP3Q9NQH7 507 aa14.67□□□□□ -0.06
PTCH1-222ENST00000551425 A0A1W2PQ45 241 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-222ENST00000551425 A0A1W2PQY0 241 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 RARBP10826 455 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 ERCC3P19447 782 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 PBX2P40425 430 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 GORABQ5T7V8 394 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 ADGRA1Q86SQ6 560 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 SLC44A5Q8NCS7 719 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 ACER1Q8TDN7 264 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 MAML3Q96JK9 1138 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 SPATC1LQ9H0A9 340 aa14.66□□□□□ -0.06
PTCH1-222ENST00000551425 CXXC1Q9P0U4 656 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-222ENST00000551425 SAP30BPQ9UHR5 308 aaKnown RBP14.66□□□□□ -0.06
PTCH1-222ENST00000551425 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-222ENST00000551425 ROBO3Q96MS0 1386 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 DCDC2CA8MYV0 355 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 TIMP1P01033 207 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 UQCRFS1P1P0C7P4 283 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 BMP1P13497 986 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 COG2Q14746 738 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 RAB3GAP1Q15042 981 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 CCDC85BQ15834 202 aaPredicted RBP14.65□□□□□ -0.06
PTCH1-222ENST00000551425 MFSD5Q6N075 450 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 CCDC174Q6PII3 467 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 CCDC129Q6ZRS4 1044 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 C16orf59Q7L2K0 433 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 MROH8Q9H579 483 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 MRS2Q9HD23 443 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 HOXC10Q9NYD6 342 aa14.65□□□□□ -0.06
PTCH1-222ENST00000551425 GRXCR1A8MXD5 290 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 IGSF3O75054 1194 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 PGK1P00558 417 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 PPIGQ13427 754 aaKnown RBP eCLIP14.64□□□□□ -0.07
PTCH1-222ENST00000551425 TMEM240Q5SV17 173 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 TSEN34Q9BSV6 310 aaKnown RBP14.64□□□□□ -0.07
PTCH1-222ENST00000551425 EHD4Q9H223 541 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 TSPYL2Q9H2G4 693 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-222ENST00000551425 TBX21Q9UL17 535 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 HCN4Q9Y3Q4 1203 aa14.64□□□□□ -0.07
PTCH1-222ENST00000551425 IGFBP4P22692 258 aa14.63□□□□□ -0.07
PTCH1-222ENST00000551425 ABCB5Q2M3G0 1257 aa14.63□□□□□ -0.07
PTCH1-222ENST00000551425 CERKLQ49MI3 558 aaPredicted RBP14.63□□□□□ -0.07
PTCH1-222ENST00000551425 MB21D1Q8N884 522 aa14.63□□□□□ -0.07
PTCH1-222ENST00000551425 NECAB3Q96P71 396 aaPredicted RBP14.63□□□□□ -0.07
PTCH1-222ENST00000551425 SERPINB13Q9UIV8 391 aa14.63□□□□□ -0.07
PTCH1-222ENST00000551425 ZNF521Q96K83 1311 aa14.63□□□□□ -0.07
PTCH1-222ENST00000551425 FOCADQ5VW36 1801 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 MTX1Q13505 466 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 RAB30Q15771 203 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 AAK1Q2M2I8 961 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 ALDH1L2Q3SY69 923 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 NUP133Q8WUM0 1156 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 LRFN3Q9BTN0 628 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 CABP5Q9NP86 173 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 MSRAQ9UJ68 235 aa14.62□□□□□ -0.07
PTCH1-222ENST00000551425 CHD7Q9P2D1 2997 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 SRGAP3O43295 1099 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 ADAMTS4O75173 837 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 FCER1AP12319 257 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 GUCY1A2P33402 732 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 ACLYP53396 1101 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 PSRC1Q6PGN9 363 aaPredicted RBP14.61□□□□□ -0.07
PTCH1-222ENST00000551425 STARD7Q9NQZ5 370 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 CDK5RAP2Q96SN8 1893 aa14.61□□□□□ -0.07
PTCH1-222ENST00000551425 MOXD2PA6NHM9 499 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 AKR1A1P14550 325 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 CSF2RAP15509 400 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 DYNLL1P63167 89 aaKnown RBP14.6□□□□□ -0.07
PTCH1-222ENST00000551425 TTC6Q86TZ1 520 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 NCAPG2Q86XI2 1143 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 CERS3Q8IU89 383 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 TMEM199Q8N511 208 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 MEIS3Q99687 375 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 TINF2Q9BSI4 451 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 TANGO6Q9C0B7 1094 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 SNRKQ9NRH2 765 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 DIS3Q9Y2L1 958 aaKnown RBP14.6□□□□□ -0.07
PTCH1-222ENST00000551425 PIEZO1Q92508 2521 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 A0A0G2JMZ2 1700 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 MROH7Q68CQ1 1323 aa14.6□□□□□ -0.07
PTCH1-222ENST00000551425 CYP2E1P05181 493 aaPredicted RBP14.59□□□□□ -0.07
PTCH1-222ENST00000551425 ZNF865P0CJ78 1059 aaPredicted RBP14.59□□□□□ -0.07
PTCH1-222ENST00000551425 TAL1P17542 331 aaPredicted RBP14.59□□□□□ -0.07
PTCH1-222ENST00000551425 DSG3P32926 999 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 SHMT1P34896 483 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 CDK7P50613 346 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 PLS1Q14651 629 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 CCSAPQ6IQ19 270 aaPredicted RBP14.59□□□□□ -0.07
PTCH1-222ENST00000551425 ZNF365Q70YC5 407 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 KLHDC9Q8NEP7 349 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 HERVK_113Q902F9 699 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 EPHX3Q9H6B9 360 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 SLC28A3Q9HAS3 691 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms