RNA–Protein interactions for RNA: ENST00000550155.5

CNOT2-222, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 2

Gene CNOT2, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-222	ENST00000550155	GLI1	P08151	1106 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	SRF	P11831	508 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	EGR3	Q06889	387 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	RAD51AP2	Q09MP3	1159 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	PKN1	Q16512	942 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	GAB4	Q2WGN9	574 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	LRRFIP1	Q32MZ4	808 aa	Known RBP	7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	MPZL3	Q6UWV2	235 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	GK5	Q6ZS86	529 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	KIAA0825	Q8IV33	1275 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	KSR1	Q8IVT5	923 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	REXO1	Q8N1G1	1221 aa	Known RBP	7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	SPON2	Q9BUD6	331 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	NT5C1A	Q9BXI3	368 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	BACH2	Q9BYV9	841 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	EHMT1	Q9H9B1	1298 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	TMEM59L	Q9UK28	342 aa		7.93	□□□□□ -1.14
CNOT2-222	ENST00000550155	WASH4P	A8MWX3	477 aa		7.92	□□□□□ -1.14
CNOT2-222	ENST00000550155	CRK	P46108	304 aa		7.92	□□□□□ -1.14
CNOT2-222	ENST00000550155	HK2	P52789	917 aa		7.92	□□□□□ -1.14
CNOT2-222	ENST00000550155	FYB2	Q5VWT5	728 aa		7.92	□□□□□ -1.14
CNOT2-222	ENST00000550155	DHX38	Q92620	1227 aa	Known RBP	7.92	□□□□□ -1.14
CNOT2-222	ENST00000550155	METTL5	Q9NRN9	209 aa	Known RBP	7.92	□□□□□ -1.14
CNOT2-222	ENST00000550155	DNAJC25-GNG10	A0A024R161	153 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	C8A	P07357	584 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	MLANA	Q16655	118 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	ZNF648	Q5T619	568 aa	Predicted RBP	7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	LCE3B	Q5TA77	95 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	KRTAP19-1	Q8IUB9	90 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	ABHD4	Q8TB40	342 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	C19orf73	Q9NVV2	129 aa		7.91	□□□□□ -1.14
CNOT2-222	ENST00000550155	RBM47	A0AV96	593 aa	Known RBP	7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	RBAK-RBAKDN	I3L0D1	243 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	RALGPS1	Q5JS13	557 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	CDCP2	Q5VXM1	449 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	OVOS1	Q6IE37	1185 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	USP48	Q86UV5	1035 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	ENOX1	Q8TC92	643 aa	Known RBP	7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	MYLIP	Q8WY64	445 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	ADAMTS10	Q9H324	1103 aa		7.9	□□□□□ -1.14
CNOT2-222	ENST00000550155	ZNF503-AS2	A6NEH8	195 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	CCNF	P41002	786 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	CLC	Q05315	142 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	NLRC3	Q7RTR2	1065 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	SLITRK4	Q8IW52	837 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	OXR1	Q8N573	874 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	RNF34	Q969K3	372 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	ATG4C	Q96DT6	458 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	LIN37	Q96GY3	246 aa	Predicted RBP	7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	FAM84A	Q96KN4	292 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	CNNM2	Q9H8M5	875 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	PCDHA11	Q9Y5I1	949 aa		7.89	□□□□□ -1.15
CNOT2-222	ENST00000550155	CLEC3A	O75596	197 aa		7.88	□□□□□ -1.15
CNOT2-222	ENST00000550155	UBOX5	O94941	541 aa		7.88	□□□□□ -1.15
CNOT2-222	ENST00000550155	NMI	Q13287	307 aa	Predicted RBP	7.88	□□□□□ -1.15
CNOT2-222	ENST00000550155	SSU72P8	A0A1W2PR75	194 aa		7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	FANCC	Q00597	558 aa		7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	KRTAP1-3	Q8IUG1	177 aa		7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	SPPL2C	Q8IUH8	684 aa		7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	PDZD8	Q8NEN9	1154 aa		7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	VWCE	Q96DN2	955 aa		7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	EAF1	Q96JC9	268 aa	Predicted RBP	7.87	□□□□□ -1.15
CNOT2-222	ENST00000550155	BTBD11	A6QL63	1104 aa		7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	IMPDH2	P12268	514 aa		7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	DUSP4	Q13115	394 aa		7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	LDLRAD1	Q5T700	205 aa		7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	NBPF12	Q5TAG4	269 aa	Predicted RBP	7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	SYTL5	Q8TDW5	730 aa	Predicted RBP	7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	7.86	□□□□□ -1.15
CNOT2-222	ENST00000550155	SHISA3	A0PJX4	238 aa		7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	FITM1	A5D6W6	292 aa		7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	SCAMP3	O14828	347 aa	Known RBP	7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	HPX	P02790	462 aa		7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	NME1	P15531	152 aa	Known RBP	7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	POLR2B	P30876	1174 aa	Known RBP	7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	NBPF9	Q3BBW0	867 aa		7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	ZNF655	Q8N720	491 aa	Predicted RBP	7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	DHRS1	Q96LJ7	313 aa		7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	FERD3L	Q96RJ6	166 aa		7.85	□□□□□ -1.15
CNOT2-222	ENST00000550155	ZGLP1	P0C6A0	271 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	PCBP3	P57721	371 aa	Known RBP	7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	ERVFC1	P60507	584 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	CHRNE	Q04844	493 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	ZNF394	Q53GI3	561 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	RNF111	Q6ZNA4	994 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	PRR23B	Q6ZRT6	265 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	LILRA2	Q8N149	483 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	DAGLB	Q8NCG7	672 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	PPP1R16B	Q96T49	567 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	MKRN2	Q9H000	416 aa	Known RBP	7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	PCDHGB7	Q9Y5F8	929 aa		7.84	□□□□□ -1.15
CNOT2-222	ENST00000550155	MEIS3P2	A8K0S8	358 aa		7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	VAMP1	P23763	118 aa		7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	MESP2	Q0VG99	397 aa		7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	FZD5	Q13467	585 aa		7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	ZNF124	Q15973	351 aa		7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	FBXW10	Q5XX13	1052 aa		7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	7.83	□□□□□ -1.16
CNOT2-222	ENST00000550155	DIRC2	Q96SL1	478 aa		7.83	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms