RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 DENND2AQ9ULE3 1009 aa10.1□□□□□ -0.79
VPS29-203ENST00000546588 RPAP1Q9BWH6 1393 aaPredicted RBP10.1□□□□□ -0.79
VPS29-203ENST00000546588 SBF1O95248 1867 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 SOWAHDA6NJG2 315 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 GOLIM4O00461 696 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 RNF113AO15541 343 aaKnown RBP10.09□□□□□ -0.79
VPS29-203ENST00000546588 MAP4K4O95819 1239 aaPredicted RBP10.09□□□□□ -0.79
VPS29-203ENST00000546588 ABL1P00519 1130 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 SEC13P55735 322 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 RAB15P59190 212 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 NECTIN1Q15223 517 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 MCMDC2Q4G0Z9 681 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 CAVIN4Q5BKX8 364 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 RNF20Q5VTR2 975 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 ZSCAN25Q6NSZ9 544 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 TDRD7Q8NHU6 1098 aaKnown RBP10.09□□□□□ -0.79
VPS29-203ENST00000546588 APPBP2Q92624 585 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 CNKSR1Q969H4 720 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 EDC3Q96F86 508 aaKnown RBP10.09□□□□□ -0.79
VPS29-203ENST00000546588 FAM227BQ96M60 508 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 DSCC1Q9BVC3 393 aa10.09□□□□□ -0.79
VPS29-203ENST00000546588 GNL3LQ9NVN8 582 aaKnown RBP10.09□□□□□ -0.79
VPS29-203ENST00000546588 MAST3O60307 1309 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 MYH1P12882 1939 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 SFI1A8K8P3 1242 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 SNAP23O00161 211 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 TGFB2P61812 414 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 GORABQ5T7V8 394 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 CWC27Q6UX04 472 aaKnown RBP10.08□□□□□ -0.8
VPS29-203ENST00000546588 PI16Q6UXB8 463 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 SH3RF1Q7Z6J0 888 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 ZNF589Q86UQ0 364 aaPredicted RBP10.08□□□□□ -0.8
VPS29-203ENST00000546588 TBC1D16Q8TBP0 767 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 IPO9Q96P70 1041 aaKnown RBP10.08□□□□□ -0.8
VPS29-203ENST00000546588 DNAJC2Q99543 621 aaKnown RBP10.08□□□□□ -0.8
VPS29-203ENST00000546588 HINFPQ9BQA5 517 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 C1QTNF2Q9BXJ5 285 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS29-203ENST00000546588 PCDHB11Q9Y5F2 797 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 ADAMTSL1Q8N6G6 1762 aa10.08□□□□□ -0.8
VPS29-203ENST00000546588 MYH8P13535 1937 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 H0YIN7 160 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 FOXP2O15409 715 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 KCNA3P22001 575 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 KLRK1P26718 216 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 HIBADHP31937 336 aaKnown RBP10.07□□□□□ -0.8
VPS29-203ENST00000546588 GPSM2P81274 684 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 RABEP1Q15276 862 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 MSL1Q68DK7 614 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 TXNRD3Q86VQ6 643 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 SIX5Q8N196 739 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 TM6SF1Q9BZW5 370 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 ANO2Q9NQ90 1003 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 PIH1D3Q9NQM4 214 aaKnown RBP10.07□□□□□ -0.8
VPS29-203ENST00000546588 GGA1Q9UJY5 639 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 FAM205AQ6ZU69 1335 aa10.07□□□□□ -0.8
VPS29-203ENST00000546588 WTIPA6NIX2 430 aaPredicted RBP10.06□□□□□ -0.8
VPS29-203ENST00000546588 PPFIA3O75145 1194 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 PDE6AP16499 860 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 NCLP19338 710 aaKnown RBP10.06□□□□□ -0.8
VPS29-203ENST00000546588 MCCP23508 829 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 GYG1P46976 350 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 MARSP56192 900 aaKnown RBP10.06□□□□□ -0.8
VPS29-203ENST00000546588 RBM10P98175 930 aaKnown RBP10.06□□□□□ -0.8
VPS29-203ENST00000546588 FKBP4Q02790 459 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS29-203ENST00000546588 NBPF20Q3BBV1 942 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 PRPF40BQ6NWY9 871 aaKnown RBP10.06□□□□□ -0.8
VPS29-203ENST00000546588 ZNF804AQ7Z570 1209 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 C2CD5Q86YS7 1000 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 ZGPATQ8N5A5 531 aaKnown RBP10.06□□□□□ -0.8
VPS29-203ENST00000546588 MEIOBQ8N635 442 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 OSBP2Q969R2 916 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 VPS33BQ9H267 617 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 POLLQ9UGP5 575 aa10.06□□□□□ -0.8
VPS29-203ENST00000546588 GREB1LQ9C091 1923 aaPredicted RBP10.05□□□□□ -0.8
VPS29-203ENST00000546588 UFL1O94874 794 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 GSK3AP49840 483 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 FKBP1AP62942 108 aaKnown RBP10.05□□□□□ -0.8
VPS29-203ENST00000546588 PTH1RQ03431 593 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 MAP3K12Q12852 859 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 ARID5BQ14865 1188 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 ALX1Q15699 326 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 ZNF384Q8TF68 577 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 PSMD1Q99460 953 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 COA1Q9GZY4 146 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 ALDH8A1Q9H2A2 487 aaPredicted RBP10.05□□□□□ -0.8
VPS29-203ENST00000546588 ANKIB1Q9P2G1 1089 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 SUGT1Q9Y2Z0 365 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 CD2APQ9Y5K6 639 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 COL4A5P29400 1685 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 SIPA1L1O43166 1804 aa10.05□□□□□ -0.8
VPS29-203ENST00000546588 MAN1A2O60476 641 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 HSPD1P10809 573 aaKnown RBP10.04□□□□□ -0.8
VPS29-203ENST00000546588 KCNJ4P48050 445 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 USP4Q13107 963 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 ZNF211Q13398 564 aaPredicted RBP10.04□□□□□ -0.8
VPS29-203ENST00000546588 KIAA1211Q6ZU35 1233 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 SLC51AQ86UW1 340 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 LINC00528Q8N1L1 170 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 FBXL16Q8N461 479 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms