RNA–Protein interactions for RNA: ENST00000546120.2

UBC-213, Transcript of ubiquitin C, human

TSL 5 BASIC

Gene UBC, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBC-213	ENST00000546120	FBXW7	Q969H0	707 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	CENPT	Q96BT3	561 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	ALS2CR12	Q96Q35	445 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	PURB	Q96QR8	312 aa	Known RBP	11.38	□□□□□ -0.59
UBC-213	ENST00000546120	PAIP2	Q9BPZ3	127 aa	Known RBP	11.38	□□□□□ -0.59
UBC-213	ENST00000546120	PLCD4	Q9BRC7	762 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.38	□□□□□ -0.59
UBC-213	ENST00000546120	SLC40A1	Q9NP59	571 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	CWC25	Q9NXE8	425 aa	Predicted RBP	11.38	□□□□□ -0.59
UBC-213	ENST00000546120	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.38	□□□□□ -0.59	9e-7	■■□□□ 13.5
UBC-213	ENST00000546120	STIM2	Q9P246	746 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	CPSF2	Q9P2I0	782 aa	Known RBP	11.38	□□□□□ -0.59
UBC-213	ENST00000546120	CAPN11	Q9UMQ6	739 aa		11.38	□□□□□ -0.59
UBC-213	ENST00000546120	ZNF142	P52746	1687 aa	Predicted RBP	11.38	□□□□□ -0.59
UBC-213	ENST00000546120	ZNF609	O15014	1411 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120		A0A1W2PQJ5	194 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	C5orf60	A6NFR6	353 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CES2	O00748	559 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	SH2B2	O14492	632 aa	Predicted RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	N4BP3	O15049	544 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	GYPC	P04921	128 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	PAEP	P09466	180 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	HSPD1	P10809	573 aa	Known RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	XBP1	P17861	261 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CASP14	P31944	242 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	SH3BGR	P55822	239 aa	Predicted RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	MTMR3	Q13615	1198 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CUL4B	Q13620	913 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	PPP2R5A	Q15172	486 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	RABL6	Q3YEC7	729 aa	Predicted RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	AKAP4	Q5JQC9	854 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	SPECC1	Q5M775	1068 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CCDC122	Q5T0U0	273 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CYB5D1	Q6P9G0	228 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	NOSTRIN	Q8IVI9	506 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	IQCK	Q8N0W5	287 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	TMTC2	Q8N394	836 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	RNF10	Q8N5U6	811 aa	Known RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	FBXO41	Q8TF61	875 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	ZNF473	Q8WTR7	871 aa	Known RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	LRRC45	Q96CN5	670 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CLIC6	Q96NY7	704 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CCT8L2	Q96SF2	557 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	NUP88	Q99567	741 aa	Predicted RBP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	ALG1	Q9BT22	464 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	SUGCT	Q9HAC7	445 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CHPF2	Q9P2E5	772 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	MAP3K2	Q9Y2U5	619 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	CPD	O75976	1380 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	NID2	Q14112	1375 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	TNR	Q92752	1358 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	HEG1	Q9ULI3	1381 aa		11.37	□□□□□ -0.59
UBC-213	ENST00000546120	ACE	P12821	1306 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	KLF18	A0A0U1RQI7	1052 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	ERICH2	A1L162	156 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	GMNC	A6NCL1	334 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	GOLGA8B	A8MQT2	603 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	NR1D1	P20393	614 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	KRT9	P35527	623 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	DNM2	P50570	870 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	TEF	Q10587	303 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	SPA17	Q15506	151 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.36	□□□□□ -0.59
UBC-213	ENST00000546120	RNF187	Q5TA31	235 aa	Predicted RBP	11.36	□□□□□ -0.59
UBC-213	ENST00000546120	KRT40	Q6A162	431 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	WWC2	Q6AWC2	1192 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	STOX1	Q6ZVD7	989 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.36	□□□□□ -0.59	1e-10	■■□□□ 11.6
UBC-213	ENST00000546120	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.36	□□□□□ -0.59
UBC-213	ENST00000546120	FAM114A1	Q8IWE2	563 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	FUK	Q8N0W3	1084 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	GBP7	Q8N8V2	638 aa	Predicted RBP	11.36	□□□□□ -0.59
UBC-213	ENST00000546120	CERK	Q8TCT0	537 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	DDX54	Q8TDD1	881 aa	Known RBP	11.36	□□□□□ -0.59
UBC-213	ENST00000546120	ITFG2	Q969R8	447 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	ATP6V1G3	Q96LB4	118 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	NEUROD6	Q96NK8	337 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	EDEM3	Q9BZQ6	932 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	EBF2	Q9HAK2	575 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	SNX12	Q9UMY4	172 aa		11.36	□□□□□ -0.59
UBC-213	ENST00000546120	ANGEL1	Q9UNK9	670 aa	Known RBP	11.36	□□□□□ -0.59
UBC-213	ENST00000546120	FOXO3	O43524	673 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	PRC1	O43663	620 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	IARS	P41252	1262 aa	Known RBP	11.35	□□□□□ -0.59
UBC-213	ENST00000546120	LIFR	P42702	1097 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	TTF1	Q15361	905 aa	Predicted RBP	11.35	□□□□□ -0.59
UBC-213	ENST00000546120	CFAP221	Q4G0U5	840 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	AGBL2	Q5U5Z8	902 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	GKAP1	Q5VSY0	366 aa	Predicted RBP	11.35	□□□□□ -0.59
UBC-213	ENST00000546120	CCDC129	Q6ZRS4	1044 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	SH3RF1	Q7Z6J0	888 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.35	□□□□□ -0.59
UBC-213	ENST00000546120	SGMS1	Q86VZ5	419 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.35	□□□□□ -0.59
UBC-213	ENST00000546120	MB21D2	Q8IYB1	491 aa	Predicted RBP	11.35	□□□□□ -0.59
UBC-213	ENST00000546120	TRIM22	Q8IYM9	498 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	CACNA2D3	Q8IZS8	1091 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	MYCBPAP	Q8TBZ2	947 aa		11.35	□□□□□ -0.59
UBC-213	ENST00000546120	MMS19	Q96T76	1030 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms