RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 CACNA1SQ13698 1873 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 A0A0U1RQG5 324 aaPredicted RBP9.91□□□□□ -0.82
TDP1-204ENST00000545686 ACTN2P35609 894 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 RASGRF1Q13972 1273 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 SEC23AQ15436 765 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 WDR93Q6P2C0 686 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 DNAJC10Q8IXB1 793 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 SLC35F6Q8N357 371 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 PNKPQ96T60 521 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 PRDM11Q9NQV5 511 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 ABHD10Q9NUJ1 306 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 RBM28Q9NW13 759 aaKnown RBP9.91□□□□□ -0.82
TDP1-204ENST00000545686 PUF60Q9UHX1 559 aaKnown RBP9.91□□□□□ -0.82
TDP1-204ENST00000545686 RWDD2AQ9UIY3 292 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 CASZ1Q86V15 1759 aa9.91□□□□□ -0.82
TDP1-204ENST00000545686 SCN7AQ01118 1682 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 PRPF3O43395 683 aaKnown RBP9.9□□□□□ -0.82
TDP1-204ENST00000545686 ADRA2BP18089 450 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 LMAN1P49257 510 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 FXR1P51114 621 aaKnown RBP eCLIP9.9□□□□□ -0.82
TDP1-204ENST00000545686 RRP12Q5JTH9 1297 aaKnown RBP9.9□□□□□ -0.82
TDP1-204ENST00000545686 KLHL10Q6JEL2 608 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 LEKR1Q6ZMV7 388 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 SYNE4Q8N205 404 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 FAM71BQ8TC56 605 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 PDE11AQ9HCR9 933 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 MED4Q9NPJ6 270 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 FEZ2Q9UHY8 353 aaPredicted RBP9.9□□□□□ -0.82
TDP1-204ENST00000545686 SLC4A4Q9Y6R1 1079 aa9.9□□□□□ -0.82
TDP1-204ENST00000545686 ERVV-1B6SEH8 477 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 ZBTB22O15209 634 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 PCP11498 1178 aaKnown RBP9.9□□□□□ -0.83
TDP1-204ENST00000545686 GPTP24298 496 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 MCM3P25205 808 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 AFMP43652 599 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 ATP2C1P98194 919 aaPredicted RBP9.9□□□□□ -0.83
TDP1-204ENST00000545686 AMPD2Q01433 879 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 PPARAQ07869 468 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 KRT31Q15323 416 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 HLFQ16534 295 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 LCORLQ8N3X6 602 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 BBXQ8WY36 941 aaPredicted RBP9.9□□□□□ -0.83
TDP1-204ENST00000545686 ESR2Q92731 530 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 EPSTI1Q96J88 318 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 VIPAS39Q9H9C1 493 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 TOMM22Q9NS69 142 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 RMND1Q9NWS8 449 aa9.9□□□□□ -0.83
TDP1-204ENST00000545686 TRMT112Q9UI30 125 aaKnown RBP9.9□□□□□ -0.83
TDP1-204ENST00000545686 CICQ96RK0 1608 aaPredicted RBP9.89□□□□□ -0.83
TDP1-204ENST00000545686 GTPBP6O43824 516 aaPredicted RBP9.89□□□□□ -0.83
TDP1-204ENST00000545686 CALM1P0DP23 149 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 CALM2P0DP24 149 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 CALM3P0DP25 149 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ARHGAP25P42331 645 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 TRAPPC10P48553 1259 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 STX17P56962 302 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ERVK-24P63145 666 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 FUT2Q10981 343 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 E2F4Q16254 413 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 PKN1Q16512 942 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 NUP133Q8WUM0 1156 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 CPLX3Q8WVH0 158 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 TNFRSF25Q93038 417 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ZKSCAN3Q9BRR0 538 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ZSWIM4Q9H7M6 989 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ABCB6Q9NP58 842 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 CTNND2Q9UQB3 1225 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 TNKSO95271 1327 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 MAST2Q6P0Q8 1798 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 WNK3Q9BYP7 1800 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 N4BP3O15049 544 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ATP2B1P20020 1258 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 COPB1P53618 953 aaKnown RBP9.89□□□□□ -0.83
TDP1-204ENST00000545686 PAK1Q13153 545 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 SEMA3FQ13275 785 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 MCM6Q14566 821 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 CASP8Q14790 479 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 HSP90B2PQ58FF3 399 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ZNF662Q6ZS27 426 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 ACRBPQ8NEB7 543 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 SHISA4Q96DD7 197 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 VPS54Q9P1Q0 977 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 VPS18Q9P253 973 aa9.89□□□□□ -0.83
TDP1-204ENST00000545686 XDHP47989 1333 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 KIAA1551Q9HCM1 1747 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 A0A0U1RQJ8 604 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 PRKAB2O43741 272 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 VSNL1P62760 191 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 TCP11X2Q5H9J9 407 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 TTC38Q5R3I4 469 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 ZNF658Q5TYW1 1059 aaPredicted RBP9.88□□□□□ -0.83
TDP1-204ENST00000545686 ATRIPQ8WXE1 791 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 RPGRIP1Q96KN7 1286 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 CDC5LQ99459 802 aaKnown RBP9.88□□□□□ -0.83
TDP1-204ENST00000545686 RASSF4Q9H2L5 321 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 MYO6Q9UM54 1294 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 SLIT2O94813 1529 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 CCDC88AQ3V6T2 1871 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 FAM205CA6NFA0 338 aa9.88□□□□□ -0.83
TDP1-204ENST00000545686 PSMD14O00487 310 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms