RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SKI	P12755	728 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	MCAM	P43121	646 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	INHBE	P58166	350 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	TRIM32	Q13049	653 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	MMRN1	Q13201	1228 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	VGLL4	Q14135	290 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	DCAF15	Q66K64	600 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	ERC1	Q8IUD2	1116 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	ADAMTS19	Q8TE59	1207 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	FAM151A	Q8WW52	585 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	ZNF512B	Q96KM6	892 aa	Predicted RBP	9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	CHMP4B	Q9H444	224 aa	Known RBP	9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	CSAD	Q9Y600	493 aa		9.41	□□□□□ -0.9
SNHG1-223	ENST00000545440	ZSWIM8	A7E2V4	1837 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	ATRNL1	Q5VV63	1379 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	IGSF3	O75054	1194 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	VARS	P26640	1264 aa	Known RBP	9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	GSTO1	P78417	241 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	MECOM	Q03112	1051 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	NFIA	Q12857	509 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	HSP90AB4P	Q58FF6	505 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	CCDC158	Q5M9N0	1113 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	PI16	Q6UXB8	463 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	OPTN	Q96CV9	577 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	WRNIP1	Q96S55	665 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	DBNDD2	Q9BQY9	259 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	IDI2	Q9BXS1	227 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	ZBTB40	Q9NUA8	1239 aa		9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	DBNL	Q9UJU6	430 aa	Known RBP	9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	BAZ2A	Q9UIF9	1905 aa	Known RBP	9.4	□□□□□ -0.9
SNHG1-223	ENST00000545440	GPR75-ASB3	A0A0A6YYF3	556 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	HMMR	O75330	724 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	ENTPD3	O75355	529 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	MAP4K4	O95819	1239 aa	Predicted RBP	9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	BTD	P43251	543 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	TCP10	Q12799	353 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	PDE3A	Q14432	1141 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	MAP7D1	Q3KQU3	841 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	TTC39A	Q5SRH9	613 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	RPAP2	Q8IXW5	612 aa	Predicted RBP	9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	ZNF384	Q8TF68	577 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	NSUN4	Q96CB9	384 aa	Known RBP	9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	ABHD8	Q96I13	439 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	ZNF341	Q9BYN7	854 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	ELP3	Q9H9T3	547 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	USP40	Q9NVE5	1235 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	SNCAIP	Q9Y6H5	919 aa		9.39	□□□□□ -0.91
SNHG1-223	ENST00000545440	IGF2BP3	O00425	579 aa	Known RBP eCLIP	9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	WDHD1	O75717	1129 aa	Predicted RBP	9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	LDHC	P07864	332 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	RGS3	P49796	1198 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	SH3BP2	P78314	561 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	DGKZ	Q13574	1117 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	ERO1B	Q86YB8	467 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	EHBP1	Q8NDI1	1231 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	FOXJ1	Q92949	421 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	EAF2	Q96CJ1	260 aa	Predicted RBP	9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	MCOLN1	Q9GZU1	580 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	VRTN	Q9H8Y1	702 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	EXOC6B	Q9Y2D4	811 aa		9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	RBM19	Q9Y4C8	960 aa	Known RBP	9.38	□□□□□ -0.91
SNHG1-223	ENST00000545440	GPR25	O00155	361 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	TBC1D8	O95759	1140 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	GTF2A2	P52657	109 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	RHBDL3	P58872	404 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	PPIL2	Q13356	520 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	NOL9	Q5SY16	702 aa	Known RBP	9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	OTUD7B	Q6GQQ9	843 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	TBC1D9	Q6ZT07	1266 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	SH3RF1	Q7Z6J0	888 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	CTU1	Q7Z7A3	348 aa	Known RBP	9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	ZNF296	Q8WUU4	475 aa	Predicted RBP	9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	TLR7	Q9NYK1	1049 aa	Known RBP	9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	RAI14	Q9P0K7	980 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	LRP2BP	Q9P2M1	347 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	ZNF112	Q9UJU3	913 aa		9.37	□□□□□ -0.91
SNHG1-223	ENST00000545440	DOCK3	Q8IZD9	2030 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	CYP2E1	P05181	493 aa	Predicted RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	PPAT	Q06203	517 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	EML3	Q32P44	896 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	NAA16	Q6N069	864 aa	Predicted RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	TMED8	Q6PL24	325 aa	Predicted RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	MIGA2	Q7L4E1	593 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	AACS	Q86V21	672 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	SIRT2	Q8IXJ6	389 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	RHPN1	Q8TCX5	695 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	ZKSCAN4	Q969J2	545 aa	Predicted RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	KIF1BP	Q96EK5	621 aa		9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	ZCCHC17	Q9NP64	241 aa	Known RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	DDX4	Q9NQI0	724 aa	Known RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	MAFB	Q9Y5Q3	323 aa	Predicted RBP	9.36	□□□□□ -0.91
SNHG1-223	ENST00000545440	CCL15-CCL14	A0A0B4J2E2	113 aa		9.35	□□□□□ -0.91
SNHG1-223	ENST00000545440	FKTN	O75072	461 aa		9.35	□□□□□ -0.91
SNHG1-223	ENST00000545440	RAB11FIP3	O75154	756 aa		9.35	□□□□□ -0.91
SNHG1-223	ENST00000545440	BAG3	O95817	575 aa		9.35	□□□□□ -0.91
SNHG1-223	ENST00000545440	CETP	P11597	493 aa		9.35	□□□□□ -0.91
SNHG1-223	ENST00000545440	INPP5B	P32019	993 aa		9.35	□□□□□ -0.91
SNHG1-223	ENST00000545440	MAP3K10	Q02779	954 aa		9.35	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms