RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PKN1Q16512 942 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 MYSM1Q5VVJ2 828 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 PRMT6Q96LA8 375 aaPredicted RBP16.51■□□□□ 0.23
VPS33A-209ENST00000544349 EHD4Q9H223 541 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 TAOK3Q9H2K8 898 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 DHX36Q9H2U1 1008 aaKnown RBP16.51■□□□□ 0.23
VPS33A-209ENST00000544349 TDRD3Q9H7E2 651 aaKnown RBP16.51■□□□□ 0.23
VPS33A-209ENST00000544349 CBX8Q9HC52 389 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 PLIN4Q96Q06 1357 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 CNTNAP5Q8WYK1 1306 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 NOVP48745 357 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 TCP10Q12799 353 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 KCNF1Q9H3M0 494 aa16.51■□□□□ 0.23
VPS33A-209ENST00000544349 V9GY48 417 aaPredicted RBP16.51■□□□□ 0.23
VPS33A-209ENST00000544349 MMP1P03956 469 aa16.5■□□□□ 0.23
VPS33A-209ENST00000544349 U2AF2P26368 475 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS33A-209ENST00000544349 GRM4Q14833 912 aa16.5■□□□□ 0.23
VPS33A-209ENST00000544349 SPC24Q8NBT2 197 aa16.5■□□□□ 0.23
VPS33A-209ENST00000544349 CEP95Q96GE4 821 aa16.5■□□□□ 0.23
VPS33A-209ENST00000544349 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS33A-209ENST00000544349 HDAC9Q9UKV0 1011 aa16.5■□□□□ 0.23
VPS33A-209ENST00000544349 SIPA1L1O43166 1804 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 SHMT1P34896 483 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 RTEL1Q9NZ71 1219 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 BCS1LQ9Y276 419 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 ZBTB12Q9Y330 459 aaPredicted RBP16.49■□□□□ 0.23
VPS33A-209ENST00000544349 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.49■□□□□ 0.23
VPS33A-209ENST00000544349 DDTLA6NHG4 134 aaPredicted RBP16.49■□□□□ 0.23
VPS33A-209ENST00000544349 NFKBIEO00221 500 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 AKR1B1P15121 316 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 DNAJC25Q9H1X3 360 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 MAD2L2Q9UI95 211 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 KCNJ14Q9UNX9 436 aa16.49■□□□□ 0.23
VPS33A-209ENST00000544349 IGKV6D-41A0A0C4DH26 115 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 TOP1P11387 765 aaKnown RBP16.48■□□□□ 0.23
VPS33A-209ENST00000544349 CXCL9Q07325 125 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 GNL2Q13823 731 aaKnown RBP16.48■□□□□ 0.23
VPS33A-209ENST00000544349 SAFBQ15424 915 aaKnown RBP eCLIP16.48■□□□□ 0.23
VPS33A-209ENST00000544349 SH3BP5LQ7L8J4 393 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 STAG2Q8N3U4 1231 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 OGFOD1Q8N543 542 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 AGBL3Q8NEM8 1001 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 PIBF1Q8WXW3 757 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 PI4KBQ9UBF8 816 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 hCG_1642624A0A1W2PR95 340 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 SPDYE2BA6NHP3 402 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 ENTPD3O75355 529 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 SPDYE6P0CI01 402 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 XBP1P17861 261 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 GNAQP50148 359 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 CCAR1Q8IX12 1150 aaKnown RBP16.48■□□□□ 0.23
VPS33A-209ENST00000544349 JDP2Q8WYK2 163 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 POLR3EQ9NVU0 708 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 MTMR4Q9NYA4 1195 aa16.48■□□□□ 0.23
VPS33A-209ENST00000544349 A0A087WWV3 80 aa16.47■□□□□ 0.23
VPS33A-209ENST00000544349 BTBD18B2RXH4 712 aa16.47■□□□□ 0.23
VPS33A-209ENST00000544349 ZSCAN29Q8IWY8 852 aaPredicted RBP16.47■□□□□ 0.23
VPS33A-209ENST00000544349 DIS3L2Q8IYB7 885 aaKnown RBP16.47■□□□□ 0.23
VPS33A-209ENST00000544349 SHISA4Q96DD7 197 aa16.47■□□□□ 0.23
VPS33A-209ENST00000544349 DNAJC18Q9H819 358 aa16.47■□□□□ 0.23
VPS33A-209ENST00000544349 CLIC4Q9Y696 253 aa16.47■□□□□ 0.23
VPS33A-209ENST00000544349 PALM3A6NDB9 673 aaPredicted RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 SLURP2P0DP57 97 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 SNW1Q13573 536 aaKnown RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 DLGAP5Q15398 846 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 CIAPIN1Q6FI81 312 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 C11orf57Q6ZUT1 292 aaPredicted RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 FOXP4Q8IVH2 680 aaPredicted RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 LINC00301Q8NCQ3 95 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 CCDC17Q96LX7 622 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 FOXP1Q9H334 677 aaPredicted RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 VPS54Q9P1Q0 977 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 PYCARDQ9ULZ3 195 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 GREB1LQ9C091 1923 aaPredicted RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 YEATS4O95619 227 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 ATRNL1Q5VV63 1379 aa16.46■□□□□ 0.23
VPS33A-209ENST00000544349 BAZ2BQ9UIF8 2168 aaKnown RBP16.46■□□□□ 0.23
VPS33A-209ENST00000544349 LTBP3Q9NS15 1303 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 UQCRHLA0A096LP55 91 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 UQCRHP07919 91 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 TERF1P54274 439 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 PFKFB3Q16875 520 aaPredicted RBP16.45■□□□□ 0.22
VPS33A-209ENST00000544349 ANO1Q5XXA6 986 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 SASS6Q6UVJ0 657 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 NOSTRINQ8IVI9 506 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 MTMR14Q8NCE2 650 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 PHF20Q9BVI0 1012 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 TMOD2Q9NZR1 351 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 MTMR7Q9Y216 660 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 COL2A1P02458 1487 aaPredicted RBP16.45■□□□□ 0.22
VPS33A-209ENST00000544349 SCG2P13521 617 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 STK38Q15208 465 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 METTL16Q86W50 562 aaKnown RBP16.45■□□□□ 0.22
VPS33A-209ENST00000544349 ENGASEQ8NFI3 743 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 LZTS2Q9BRK4 669 aa16.45■□□□□ 0.22
VPS33A-209ENST00000544349 ZNF70Q9UC06 446 aaPredicted RBP16.45■□□□□ 0.22
VPS33A-209ENST00000544349 FAM196BA6NMK8 535 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 TTLL1O95922 423 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 ME1P48163 572 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 ZNF165P49910 485 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms