RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 VSTM4Q8IW00 320 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 DYNLL2Q96FJ2 89 aa20.57■□□□□ 0.88
VIM-209ENST00000544301 SLFN14P0C7P3 912 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 NT5C2P49902 561 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 C15orf52Q6ZUT6 534 aaKnown RBP20.56■□□□□ 0.88
VIM-209ENST00000544301 ENOX1Q8TC92 643 aaKnown RBP20.56■□□□□ 0.88
VIM-209ENST00000544301 ZNF592Q92610 1267 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 ANKS1AQ92625 1134 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 GPR101Q96P66 508 aaPredicted RBP20.56■□□□□ 0.88
VIM-209ENST00000544301 BAZ2BQ9UIF8 2168 aaKnown RBP20.56■□□□□ 0.88
VIM-209ENST00000544301 ROBO3Q96MS0 1386 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 TMEM232C9JQI7 657 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 BAG3O95817 575 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 PPP4CP60510 307 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 ATP2C1P98194 919 aaPredicted RBP20.56■□□□□ 0.88
VIM-209ENST00000544301 PTGDRQ13258 359 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 PRR5LQ6MZQ0 368 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 SH3RF1Q7Z6J0 888 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 CCDC112Q8NEF3 446 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 LRRC4BQ9NT99 713 aa20.56■□□□□ 0.88
VIM-209ENST00000544301 SPATA31A6Q5VVP1 1343 aa20.55■□□□□ 0.88
VIM-209ENST00000544301 ZNF18P17022 549 aa20.55■□□□□ 0.88
VIM-209ENST00000544301 CCDC34Q96HJ3 373 aa20.55■□□□□ 0.88
VIM-209ENST00000544301 GJD4Q96KN9 370 aaPredicted RBP20.55■□□□□ 0.88
VIM-209ENST00000544301 INTS13Q9NVM9 706 aa20.55■□□□□ 0.88
VIM-209ENST00000544301 NFE2L3Q9Y4A8 694 aa20.55■□□□□ 0.88
VIM-209ENST00000544301 ADAMTS3O15072 1205 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 NRDCO43847 1150 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 TRAPPC10P48553 1259 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 GPSM2P81274 684 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 PIK3AP1Q6ZUJ8 805 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 PNMA1Q8ND90 353 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 PAGE5Q96GU1 130 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 MED15Q96RN5 788 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 PSDA5PKW4 1024 aaPredicted RBP20.54■□□□□ 0.88
VIM-209ENST00000544301 PLCD1P51178 756 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 TGFBRAP1Q8WUH2 860 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 MKNK2Q9HBH9 465 aa20.54■□□□□ 0.88
VIM-209ENST00000544301 VWA3AA6NCI4 1184 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 LDHCP07864 332 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 ADRA2BP18089 450 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 AFMP43652 599 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 HSP90AA4PQ58FG1 418 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 TRMT44Q8IYL2 757 aaKnown RBP20.53■□□□□ 0.88
VIM-209ENST00000544301 ANKRD7Q92527 254 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 RPGRQ92834 1020 aaKnown RBP20.53■□□□□ 0.88
VIM-209ENST00000544301 PPP1R13BQ96KQ4 1090 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.53■□□□□ 0.88
VIM-209ENST00000544301 USP17L3A6NCW0 530 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 USP17L4A6NCW7 530 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 TOP1P11387 765 aaKnown RBP20.53■□□□□ 0.88
VIM-209ENST00000544301 ERCC5P28715 1186 aaPredicted RBP20.53■□□□□ 0.88
VIM-209ENST00000544301 GRM4Q14833 912 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 CCDC178Q5BJE1 867 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 USP17L1Q7RTZ2 530 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 AMOTL1Q8IY63 956 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 STAG2Q8N3U4 1231 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 CERKQ8TCT0 537 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 TMX1Q9H3N1 280 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 TCP11L1Q9NUJ3 509 aa20.53■□□□□ 0.88
VIM-209ENST00000544301 CALML3P27482 149 aa20.52■□□□□ 0.88
VIM-209ENST00000544301 CRY2Q49AN0 593 aa20.52■□□□□ 0.88
VIM-209ENST00000544301 RTFDC1Q9BY42 306 aaPredicted RBP20.52■□□□□ 0.88
VIM-209ENST00000544301 SH3GLB2Q9NR46 395 aa20.52■□□□□ 0.88
VIM-209ENST00000544301 NAV1Q8NEY1 1877 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 KIF2AO00139 706 aaPredicted RBP20.51■□□□□ 0.87
VIM-209ENST00000544301 DPYDQ12882 1025 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 PTPN21Q16825 1174 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 CD209Q9NNX6 404 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 MAD2L2Q9UI95 211 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 UFL1O94874 794 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 TSPY3P0CV98 308 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 TSPY8P0CW00 308 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 CDK11BP21127 795 aaKnown RBP20.51■□□□□ 0.87
VIM-209ENST00000544301 CASP1P29466 404 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 MCM7P33993 719 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 SYCP1Q15431 976 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 CT47A1Q5JQC4 288 aaPredicted RBP20.51■□□□□ 0.87
VIM-209ENST00000544301 MAPKAPK5Q8IW41 473 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 BLIDQ8IZY5 108 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 SLC44A5Q8NCS7 719 aa20.51■□□□□ 0.87
VIM-209ENST00000544301 GYS1P13807 737 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 TBX2Q13207 712 aaPredicted RBP20.5■□□□□ 0.87
VIM-209ENST00000544301 IL17AQ16552 155 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 ZNF444Q8N0Y2 327 aaPredicted RBP20.5■□□□□ 0.87
VIM-209ENST00000544301 KIF18AQ8NI77 898 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 GPKOWQ92917 476 aaPredicted RBP eCLIP20.5■□□□□ 0.87
VIM-209ENST00000544301 SAMSN1Q9NSI8 373 aaKnown RBP20.5■□□□□ 0.87
VIM-209ENST00000544301 SAP30BPQ9UHR5 308 aaKnown RBP20.5■□□□□ 0.87
VIM-209ENST00000544301 ATP2B4P23634 1241 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 GNAQP50148 359 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 NCBP1Q09161 790 aaKnown RBP20.5■□□□□ 0.87
VIM-209ENST00000544301 E2F4Q16254 413 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 GSDMAQ96QA5 445 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 BCL11BQ9C0K0 894 aaPredicted RBP20.5■□□□□ 0.87
VIM-209ENST00000544301 PCDHA4Q9UN74 947 aa20.5■□□□□ 0.87
VIM-209ENST00000544301 FAM205AQ6ZU69 1335 aa20.49■□□□□ 0.87
VIM-209ENST00000544301 IL1R1P14778 569 aa20.49■□□□□ 0.87
VIM-209ENST00000544301 CD44P16070 742 aaKnown RBP20.49■□□□□ 0.87
VIM-209ENST00000544301 RASA1P20936 1047 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms