RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 LIMA1Q9UHB6 759 aaKnown RBP15.57■□□□□ 0.08
VPS33A-208ENST00000543633 ERICH4A6NGS2 130 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 RBL2Q08999 1139 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 WHAMMP3Q1A5X7 153 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 HSP90AA4PQ58FG1 418 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 RRP12Q5JTH9 1297 aaKnown RBP15.56■□□□□ 0.08
VPS33A-208ENST00000543633 OXER1Q8TDS5 423 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 GBP3Q9H0R5 595 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 LAMB1P07942 1786 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 TNKSO95271 1327 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 LRRC10BA6NIK2 292 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 PPP1R3GB7ZBB8 358 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 TULP2O00295 520 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 TEX33O43247 280 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 TRAPPC10P48553 1259 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 FUT2Q10981 343 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 PTPN21Q16825 1174 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 SEC31BQ9NQW1 1179 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 TOMM22Q9NS69 142 aa15.56■□□□□ 0.08
VPS33A-208ENST00000543633 A0A087X0B3 334 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 CTAGE9A4FU28 777 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 DDAH1O94760 285 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 CD44P16070 742 aaKnown RBP15.55■□□□□ 0.08
VPS33A-208ENST00000543633 SEMA3FQ13275 785 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 MTF1Q14872 753 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 PKN1Q16512 942 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 USP49Q70CQ1 688 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 MARCH10Q8NA82 808 aaPredicted RBP15.55■□□□□ 0.08
VPS33A-208ENST00000543633 SYMPKQ92797 1274 aaKnown RBP15.55■□□□□ 0.08
VPS33A-208ENST00000543633 TNFRSF25Q93038 417 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 USP21Q9UK80 565 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 DOT1LQ8TEK3 1739 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 PRKAB2O43741 272 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 EIF3JO75822 258 aaKnown RBP15.55■□□□□ 0.08
VPS33A-208ENST00000543633 ATP2C1P98194 919 aaPredicted RBP15.55■□□□□ 0.08
VPS33A-208ENST00000543633 SLC20A2Q08357 652 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 ANKRD20A12PQ8NF67 263 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 NUP133Q8WUM0 1156 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 RWDD2AQ9UIY3 292 aa15.55■□□□□ 0.08
VPS33A-208ENST00000543633 SCN7AQ01118 1682 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 CACNA1SQ13698 1873 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 POLR3GO15318 223 aaPredicted RBP15.54■□□□□ 0.08
VPS33A-208ENST00000543633 GYPCP04921 128 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 CYP26C1Q6V0L0 522 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 HDXQ7Z353 690 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 CATIPQ7Z7H3 387 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 DZIP3Q86Y13 1208 aaKnown RBP15.54■□□□□ 0.08
VPS33A-208ENST00000543633 ZKSCAN3Q9BRR0 538 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 RMND1Q9NWS8 449 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 ZBTB1Q9Y2K1 713 aa15.54■□□□□ 0.08
VPS33A-208ENST00000543633 MYH8P13535 1937 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 FGRP09769 529 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 HNRNPH2P55795 449 aaKnown RBP15.53■□□□□ 0.08
VPS33A-208ENST00000543633 FAM98CQ17RN3 349 aaKnown RBP15.53■□□□□ 0.08
VPS33A-208ENST00000543633 TTC38Q5R3I4 469 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 IQUBQ8NA54 791 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 NAPGQ99747 312 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-208ENST00000543633 ANKZF1Q9H8Y5 726 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 LZTFL1Q9NQ48 299 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 TAOK2Q9UL54 1235 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 ZNF804BA4D1E1 1349 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 GTPBP6O43824 516 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-208ENST00000543633 E2F4Q16254 413 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 BEND6Q5SZJ8 279 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-208ENST00000543633 SHISA4Q96DD7 197 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 EPSTI1Q96J88 318 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 ZSCAN10Q96SZ4 725 aaPredicted RBP15.53■□□□□ 0.08
VPS33A-208ENST00000543633 BRIP1Q9BX63 1249 aa15.53■□□□□ 0.08
VPS33A-208ENST00000543633 CASP14P31944 242 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 AFMP43652 599 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 KIF4BQ2VIQ3 1234 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 CCDC152Q4G0S7 254 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 PARP10Q53GL7 1025 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 ZNF569Q5MCW4 686 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 ENAHQ8N8S7 591 aaPredicted RBP15.52■□□□□ 0.08
VPS33A-208ENST00000543633 HELBQ8NG08 1087 aaPredicted RBP15.52■□□□□ 0.08
VPS33A-208ENST00000543633 EPC1Q9H2F5 836 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 ABHD10Q9NUJ1 306 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 VPS54Q9P1Q0 977 aa15.52■□□□□ 0.08
VPS33A-208ENST00000543633 THSD7AQ9UPZ6 1657 aa15.52■□□□□ 0.07
VPS33A-208ENST00000543633 MAST2Q6P0Q8 1798 aa15.52■□□□□ 0.07
VPS33A-208ENST00000543633 XDHP47989 1333 aa15.52■□□□□ 0.07
VPS33A-208ENST00000543633 PAK1Q13153 545 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 KRT31Q15323 416 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 KLHL10Q6JEL2 608 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 TMTC3Q6ZXV5 915 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 IQCA1Q86XH1 822 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CWC15Q9P013 229 aaKnown RBP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 LRP2BPQ9P2M1 347 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CTNND2Q9UQB3 1225 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CNTNAP5Q8WYK1 1306 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 MAGEB6P1A0A0J9YX57 407 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CTAGE15A4D2H0 777 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 CTAGE8P0CG41 777 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 ATP2B1P20020 1258 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 IGHMBP2P38935 993 aaKnown RBP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 NT5C2P49902 561 aa15.51■□□□□ 0.07
VPS33A-208ENST00000543633 FXR1P51114 621 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 COPB1P53618 953 aaKnown RBP15.51■□□□□ 0.07
VPS33A-208ENST00000543633 NPY5RQ15761 445 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms