RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TRPV1Q8NER1 839 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 NPLOC4Q8TAT6 608 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 KLHDC4Q8TBB5 520 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 KHSRPQ92945 711 aaKnown RBP eCLIP5.97□□□□□ -1.45
LIMS1-214ENST00000542845 RNF166Q96A37 237 aaPredicted RBP5.97□□□□□ -1.45
LIMS1-214ENST00000542845 IDI2Q9BXS1 227 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 SLC28A3Q9HAS3 691 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 DDX4Q9NQI0 724 aaKnown RBP5.97□□□□□ -1.45
LIMS1-214ENST00000542845 MSRAQ9UJ68 235 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 IVNS1ABPQ9Y6Y0 642 aa5.97□□□□□ -1.45
LIMS1-214ENST00000542845 GBF1Q92538 1859 aa5.96□□□□□ -1.45
LIMS1-214ENST00000542845 ATRNL1Q5VV63 1379 aa5.96□□□□□ -1.45
LIMS1-214ENST00000542845 GRM8O00222 908 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 GPR37L1O60883 481 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 ACRP10323 421 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 SLC5A1P13866 664 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 CAP2P40123 477 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 MAP3K10Q02779 954 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 RRP1BQ14684 758 aaKnown RBP5.96□□□□□ -1.46
LIMS1-214ENST00000542845 LRRC41Q15345 812 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 ZYXQ15942 572 aaKnown RBP5.96□□□□□ -1.46
LIMS1-214ENST00000542845 AMHR2Q16671 573 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 CSPP1Q1MSJ5 1256 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 SH3D19Q5HYK7 790 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 BEND3Q5T5X7 828 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 SLC44A5Q8NCS7 719 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 SUCLG2Q96I99 432 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 PCMTD1Q96MG8 357 aaPredicted RBP5.96□□□□□ -1.46
LIMS1-214ENST00000542845 OSBPL5Q9H0X9 879 aaPredicted RBP5.96□□□□□ -1.46
LIMS1-214ENST00000542845 ABCF2Q9UG63 623 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 UTYO14607 1347 aa5.96□□□□□ -1.46
LIMS1-214ENST00000542845 MYBBP1AQ9BQG0 1328 aaKnown RBP5.96□□□□□ -1.46
LIMS1-214ENST00000542845 SLC15A5A6NIM6 579 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 DCDC2CA8MYV0 355 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 RFXAPO00287 272 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 PTPREP23469 700 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 HOXA7P31268 230 aaPredicted RBP5.95□□□□□ -1.46
LIMS1-214ENST00000542845 BTDP43251 543 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 BACE1P56817 501 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 CCNA1P78396 465 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 ZNF365Q70YC5 407 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 DZIP1Q86YF9 867 aaKnown RBP5.95□□□□□ -1.46
LIMS1-214ENST00000542845 VTI1AQ96AJ9 217 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 TBC1D2Q9BYX2 928 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 CERS4Q9HA82 394 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 C11orf16Q9NQ32 467 aa5.95□□□□□ -1.46
LIMS1-214ENST00000542845 C19orf81C9J6K1 198 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 USP17L10C9JJH3 530 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 KIAA0355O15063 1070 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 SEPT4O43236 478 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 TLL1O43897 1013 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 GDF11O95390 407 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 PGK1P00558 417 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 CYBAP13498 195 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 CSF2RAP15509 400 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 FECHP22830 423 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 RABGGTBP53611 331 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 NHLH1Q02575 133 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 FAAP100Q0VG06 881 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 PPIGQ13427 754 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIMS1-214ENST00000542845 SNX17Q15036 470 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 PUM3Q15397 648 aaKnown RBP5.94□□□□□ -1.46
LIMS1-214ENST00000542845 RAB30Q15771 203 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 FAM47AQ5JRC9 791 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 TMEM240Q5SV17 173 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 CCDC174Q6PII3 467 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 C16orf59Q7L2K0 433 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 TRIM34Q9BYJ4 488 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 PPP1R12CQ9BZL4 782 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 BICC1Q9H694 974 aaKnown RBP5.94□□□□□ -1.46
LIMS1-214ENST00000542845 XPNPEP3Q9NQH7 507 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 GNL3LQ9NVN8 582 aaKnown RBP5.94□□□□□ -1.46
LIMS1-214ENST00000542845 SMCHD1A6NHR9 2005 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 LRRC37A2A6NM11 1700 aa5.94□□□□□ -1.46
LIMS1-214ENST00000542845 A0A1W2PQ45 241 aaPredicted RBP5.93□□□□□ -1.46
LIMS1-214ENST00000542845 A0A1W2PQY0 241 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 PI4K2BG5E9Z4 385 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 ERC2O15083 957 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 CNMDO75829 334 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 TIMP1P01033 207 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 NBPF7P0C2Y1 421 aaPredicted RBP5.93□□□□□ -1.46
LIMS1-214ENST00000542845 MYOGP15173 224 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 FGFR2P21802 821 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 JAG1P78504 1218 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 SHROOM1Q2M3G4 852 aaPredicted RBP5.93□□□□□ -1.46
LIMS1-214ENST00000542845 PPP2R2DQ66LE6 453 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 KRT40Q6A162 431 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 MFSD5Q6N075 450 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 OTOP2Q7RTS6 562 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 RNF180Q86T96 592 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 SLF2Q8IX21 1173 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 CRACR2BQ8N4Y2 399 aaPredicted RBP5.93□□□□□ -1.46
LIMS1-214ENST00000542845 TMEM199Q8N511 208 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 VGLL2Q8N8G2 317 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 GTF3C2Q8WUA4 911 aaPredicted RBP5.93□□□□□ -1.46
LIMS1-214ENST00000542845 HERVK_113Q902F9 699 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 LPIN2Q92539 896 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 KAZALD1Q96I82 304 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 WDR18Q9BV38 432 aa5.93□□□□□ -1.46
LIMS1-214ENST00000542845 SRCIN1Q9C0H9 1055 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms