RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NCOA5Q9HCD5 579 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 COL11A2P13942 1736 aaPredicted RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 CCDC69A6NI79 296 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 SETSIPP0DME0 302 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 PDCP20941 246 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 CYP7A1P22680 504 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 HIBADHP31937 336 aaKnown RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 MAGEA8P43361 318 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 NSUN4Q96CB9 384 aaKnown RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 INCENPQ9NQS7 918 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 MYH15Q9Y2K3 1946 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 PTPDC1A2A3K4 754 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 SH2B2O14492 632 aaPredicted RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 OATP04181 439 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 HOXA10P31260 410 aaPredicted RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 LMAN1P49257 510 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 ANKRD20A12PQ8NF67 263 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 ARGLU1Q9NWB6 273 aaPredicted RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 CWC15Q9P013 229 aaKnown RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 TFIP11Q9UBB9 837 aaKnown RBP9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 SLC4A4Q9Y6R1 1079 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 DUOX1Q9NRD9 1551 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 LAMB1P07942 1786 aa9.08□□□□□ -0.96
PDLIM5-221ENST00000542407 PEX14O75381 377 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 ZRANB2O95218 330 aaKnown RBP eCLIP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 FDPSP14324 419 aaKnown RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 H2AFXP16104 143 aaPredicted RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 CTDSPL2Q05D32 466 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 NYAP1Q6ZVC0 841 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 STAG1Q8WVM7 1258 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 UBXN4Q92575 508 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 NAPBQ9H115 298 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 ABCF2Q9UG63 623 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 LEMD3Q9Y2U8 911 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 XDHP47989 1333 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 ECM29Q5VYK3 1845 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 B4E1Z4 1266 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 PPP1R37O75864 691 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 OAS2P29728 719 aaKnown RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 GPSM2P81274 684 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 MECOMQ03112 1051 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 RESTQ13127 1097 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 SNW1Q13573 536 aaKnown RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 E2F4Q16254 413 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 RALYLQ86SE5 291 aaKnown RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 TTC6Q86TZ1 520 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 VPS37DQ86XT2 251 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 COL23A1Q86Y22 540 aaPredicted RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 CCAR2Q8N163 923 aaKnown RBP9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 IGDCC4Q8TDY8 1250 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 SENP2Q9HC62 589 aa9.07□□□□□ -0.96
PDLIM5-221ENST00000542407 NID2Q14112 1375 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 MAGEB6P1A0A0J9YX57 407 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 KLF18A0A0U1RQI7 1052 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 UNCXA6NJT0 531 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 IRX1P78414 480 aaPredicted RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 CDC37Q16543 378 aaPredicted RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 HOMER1Q86YM7 354 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 BICD2Q8TD16 824 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 DDX11Q96FC9 970 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 LY9Q9HBG7 655 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 RGS17Q9UGC6 210 aaPredicted RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 CCDC88AQ3V6T2 1871 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 SMIM22K7EJ46 135 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 PRDX5P30044 214 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 DYNLL1P63167 89 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 KRT85P78386 507 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 AKNAD1Q5T1N1 836 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 MAMSTRQ6ZN01 415 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 TDRD7Q8NHU6 1098 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 SDR42E1Q8WUS8 393 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 ANGEL1Q9UNK9 670 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 RRP15Q9Y3B9 282 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 PCDHGA4Q9Y5G9 962 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 RBM47A0AV96 593 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 BECN2A8MW95 431 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 ADCY2Q08462 1091 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 MUM1L1Q5H9M0 696 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 NAA16Q6N069 864 aaPredicted RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 RPGRQ92834 1020 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 RBM17Q96I25 401 aaKnown RBP9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 EPC1Q9H2F5 836 aa9.06□□□□□ -0.96
PDLIM5-221ENST00000542407 DLEC1Q9Y238 1755 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 GOLGA8BA8MQT2 603 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 APBA3O96018 575 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 NUBP1P53384 320 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 CCDC15Q0P6D6 951 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 PSMD2Q13200 908 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 GNL2Q13823 731 aaKnown RBP9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 SGMS1Q86VZ5 419 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 TMEM87BQ96K49 555 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 GPR101Q96P66 508 aaPredicted RBP9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 CRAMP1Q96RY5 1269 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 LZTS2Q9BRK4 669 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 BRIP1Q9BX63 1249 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 NACAP1Q9BZK3 213 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 ZSWIM5Q9P217 1185 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 ANKIB1Q9P2G1 1089 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 A0A087WWV3 80 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms