RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CYP2D7A0A087X1C5 515 aa18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 HOXC6P09630 235 aa18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 CERS3Q8IU89 383 aa18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 ERC1Q8IUD2 1116 aa18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 SIAH1Q8IUQ4 282 aa18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 MOV10L1Q9BXT6 1211 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 UBE2OQ9C0C9 1292 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 ARMT1Q9H993 441 aa18.77■□□□□ 0.6
CLSTN3-213ENST00000541953 VCANP13611 3396 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 MPHOSPH10O00566 681 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 AKR1B1P15121 316 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 CCNA1P78396 465 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 LRIT3Q3SXY7 679 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 ANO1Q5XXA6 986 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 DEFB123Q8N688 67 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 SLC17A8Q8NDX2 589 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 CABP5Q9NP86 173 aa18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 DDX20Q9UHI6 824 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-213ENST00000541953 MYH7P12883 1935 aa18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 COBLO75128 1261 aa18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 CYBAP13498 195 aa18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 ATN1P54259 1190 aaPredicted RBP18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 MFSD14CQ5VZR4 134 aa18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 CRNKL1Q9BZJ0 848 aaKnown RBP18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 SENP6Q9GZR1 1112 aaPredicted RBP18.75■□□□□ 0.59
CLSTN3-213ENST00000541953 ADORA2AP29274 412 aa18.74■□□□□ 0.59
CLSTN3-213ENST00000541953 CNGA1P29973 690 aa18.74■□□□□ 0.59
CLSTN3-213ENST00000541953 SPICE1Q8N0Z3 855 aa18.74■□□□□ 0.59
CLSTN3-213ENST00000541953 TANGO6Q9C0B7 1094 aa18.74■□□□□ 0.59
CLSTN3-213ENST00000541953 PRUNE2Q8WUY3 3088 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 MBD4O95243 580 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 ERCC3P19447 782 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 ATP2B2Q01814 1243 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 TTF1Q15361 905 aaPredicted RBP18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 ATG4CQ96DT6 458 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 SPATC1LQ9H0A9 340 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 MTMR10Q9NXD2 777 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 IVNS1ABPQ9Y6Y0 642 aa18.73■□□□□ 0.59
CLSTN3-213ENST00000541953 GLRX3O76003 335 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 COG2Q14746 738 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 PRAMEF19Q5SWL8 479 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 GJC2Q5T442 439 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 TMED8Q6PL24 325 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 LPAR1Q92633 364 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 KIF1BPQ96EK5 621 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 BOLA2Q9H3K6 86 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 COG6Q9Y2V7 657 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 CUL9Q8IWT3 2517 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 ZBED9Q6R2W3 1325 aa18.72■□□□□ 0.59
CLSTN3-213ENST00000541953 SPTBN5Q9NRC6 3674 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 GREB1LQ9C091 1923 aaPredicted RBP18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 ZNFX1Q9P2E3 1918 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 DLL1O00548 723 aa18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 ADD2P35612 726 aa18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 GPR153Q6NV75 609 aa18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 TMEM179Q6ZVK1 233 aa18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 CLASRPQ8N2M8 674 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 ZBTB40Q9NUA8 1239 aa18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 FBXO28Q9NVF7 368 aa18.71■□□□□ 0.59
CLSTN3-213ENST00000541953 IFIT2P09913 472 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 DSG3P32926 999 aa18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 RTP1P59025 263 aa18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 ICA1Q05084 483 aa18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 SAMD1Q6SPF0 538 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 DPP9Q86TI2 863 aa18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 PAG1Q9NWQ8 432 aa18.7■□□□□ 0.58
CLSTN3-213ENST00000541953 PLXNA1Q9UIW2 1896 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 DNM1LO00429 736 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 FLOT1O75955 427 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 PLS1Q14651 629 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 TMEM132BQ14DG7 1078 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 HSP90AB4PQ58FF6 505 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 OLFML2BQ68BL8 750 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 VCPKMTQ9H867 229 aa18.69■□□□□ 0.58
CLSTN3-213ENST00000541953 SMCHD1A6NHR9 2005 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 CDK8P49336 464 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 FAM47AQ5JRC9 791 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 C12orf60Q5U649 245 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 NCAPG2Q86XI2 1143 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 SHCBP1Q8NEM2 672 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 HOXC10Q9NYD6 342 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 TMX2Q9Y320 296 aa18.68■□□□□ 0.58
CLSTN3-213ENST00000541953 USP17L12C9JPN9 530 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 USP17L21D6R901 530 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 SMARCA5O60264 1052 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 ATP5JP18859 108 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 RPAP2Q8IXW5 612 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 MAML3Q96JK9 1138 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 GUCD1Q96NT3 240 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 HAUS7Q99871 368 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 PUS7LQ9H0K6 701 aaKnown RBP18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 SWAP70Q9UH65 585 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 ATP11BQ9Y2G3 1177 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 STXBP5LQ9Y2K9 1186 aa18.67■□□□□ 0.58
CLSTN3-213ENST00000541953 MSCO60682 206 aa18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 PGK2P07205 417 aa18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 EEF2P13639 858 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 C20orf194Q5TEA3 1177 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms