RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 ADARB2Q9NS39 739 aaKnown RBP8.56□□□□□ -1.04
VPS53-205ENST00000541903 NYAP2Q9P242 653 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 CLIP2Q9UDT6 1046 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 PPP2R3BQ9Y5P8 575 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 SIPA1L1O43166 1804 aa8.56□□□□□ -1.04
VPS53-205ENST00000541903 DICER1Q9UPY3 1922 aaKnown RBP8.56□□□□□ -1.04
VPS53-205ENST00000541903 SRCAPQ6ZRS2 3230 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 GH2P01242 217 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 EEF2P13639 858 aaKnown RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 NCLP19338 710 aaKnown RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 GUCY1B3Q02153 619 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 FUT2Q10981 343 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 RESTQ13127 1097 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 SAFBQ15424 915 aaKnown RBP eCLIP8.55□□□□□ -1.04
VPS53-205ENST00000541903 CSPP1Q1MSJ5 1256 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 CCDC96Q2M329 555 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 FOXD4L6Q3SYB3 417 aaPredicted RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 ASPRV1Q53RT3 343 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 DCAF15Q66K64 600 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 FOXD4L3Q6VB84 417 aaPredicted RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 MIGA2Q7L4E1 593 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 CDAN1Q8IWY9 1227 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 SRBD1Q8N5C6 995 aaKnown RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 FBXO18Q8NFZ0 1043 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 L3MBTL3Q96JM7 780 aaPredicted RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 ARHGEF10LQ9HCE6 1279 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 PGAP2Q9UHJ9 254 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 ZBTB21Q9ULJ3 1066 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 ISY1Q9ULR0 285 aaKnown RBP8.55□□□□□ -1.04
VPS53-205ENST00000541903 SYNPO2Q9UMS6 1093 aa8.55□□□□□ -1.04
VPS53-205ENST00000541903 PITPNM2Q9BZ72 1349 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 PALM3A6NDB9 673 aaPredicted RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 USP17L5A8MUK1 530 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 KLRF2D3W0D1 207 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 RAD21O60216 631 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 GOLGA8HP0CJ92 632 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 PDHBP11177 359 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 GUCY1A2P33402 732 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 CAP2P40123 477 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 KRT85P78386 507 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 GNL2Q13823 731 aaKnown RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 RRP1BQ14684 758 aaKnown RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 KRT40Q6A162 431 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 OTUD7BQ6GQQ9 843 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 USP17L2Q6R6M4 530 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 DCPSQ96C86 337 aaKnown RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 TEPSINQ96N21 525 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 AIFM3Q96NN9 605 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 ZNF341Q9BYN7 854 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 SH2D4AQ9H788 454 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 MAD2L2Q9UI95 211 aa8.54□□□□□ -1.04
VPS53-205ENST00000541903 SCAF8Q9UPN6 1271 aaKnown RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 V9GY48 417 aaPredicted RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 FRMPD2Q68DX3 1309 aaPredicted RBP8.54□□□□□ -1.04
VPS53-205ENST00000541903 GREB1LQ9C091 1923 aaPredicted RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 IQCA1LA6NCM1 817 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 GLTPD2A6NH11 291 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 FIBPO43427 364 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 ASNSP08243 561 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 SNHG28P0DPA3 235 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 SCG2P13521 617 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 SMARCA1P28370 1054 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 EPHX2P34913 555 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 SLC1A4P43007 532 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 HIRAP54198 1017 aaPredicted RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 KIF23Q02241 960 aaPredicted RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 MAP3K10Q02779 954 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 DNM1Q05193 864 aaKnown RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 ZNF543Q08ER8 600 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 PFKFB3Q16875 520 aaPredicted RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 SHROOM1Q2M3G4 852 aaPredicted RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 SUPT20HL1Q3ZLR7 823 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 GPATCH4Q5T3I0 446 aaKnown RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 SLFN13Q68D06 897 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 RASGRP2Q7LDG7 609 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 BRAPQ7Z569 592 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 SULF1Q8IWU6 871 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 STAG2Q8N3U4 1231 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 GMCL1P1Q8NEA9 526 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 DCAF4Q8WV16 495 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 PIBF1Q8WXW3 757 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 MKL1Q969V6 931 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 RRP36Q96EU6 259 aaKnown RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 ZNF396Q96N95 335 aaPredicted RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 SPZ1Q9BXG8 430 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 BRMS1Q9HCU9 246 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 GINM1Q9NU53 330 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 SEC63Q9UGP8 760 aaKnown RBP8.53□□□□□ -1.04
VPS53-205ENST00000541903 SBF1O95248 1867 aa8.53□□□□□ -1.04
VPS53-205ENST00000541903 MYH8P13535 1937 aa8.52□□□□□ -1.04
VPS53-205ENST00000541903 hCG_1642624A0A1W2PR95 340 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 UBE2Q2LH0YL09 131 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 CTNND1O60716 968 aaKnown RBP8.52□□□□□ -1.05
VPS53-205ENST00000541903 MMP1P03956 469 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 JAG1P78504 1218 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 PKN1Q16512 942 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 NBPF12Q5TAG4 269 aaPredicted RBP8.52□□□□□ -1.05
VPS53-205ENST00000541903 ATL3Q6DD88 541 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 USP50Q70EL3 339 aaPredicted RBP8.52□□□□□ -1.05
VPS53-205ENST00000541903 USP48Q86UV5 1035 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms