RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 MAGEC3Q8TD91 643 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 COG1Q8WTW3 980 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 BRF1Q92994 677 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 CAMKK2Q96RR4 588 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 TUBB2BQ9BVA1 445 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 NIP7Q9Y221 180 aaKnown RBP eCLIP10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 PRPHP41219 470 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 ZNF827Q17R98 1081 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 CLEC4GQ6UXB4 293 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 BICDL1Q6ZP65 573 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 YTHDF3Q7Z739 585 aaKnown RBP10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 KIAA1328Q86T90 577 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 FMR1NBQ8N0W7 255 aaPredicted RBP10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 C3orf20Q8ND61 904 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 LZTFL1Q9NQ48 299 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 ARFGEF2Q9Y6D5 1785 aa10.68□□□□□ -0.7
CTNNA1-243ENST00000540387 JAK2O60674 1132 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 NLRP12P59046 1061 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 STK3Q13188 491 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 SF3B2Q13435 895 aaKnown RBP10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 MTX1Q13505 466 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 C1QTNF12Q5T7M4 302 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 SUSD4Q5VX71 490 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 SH3GL2Q99962 352 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 CRACR2AQ9BSW2 395 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 FANCLQ9NW38 375 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 H3BQV1 296 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 IKBKBO14920 756 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 MTA1Q13330 715 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 RNF187Q5TA31 235 aaPredicted RBP10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 IFFO2Q5TF58 517 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 CCDC50Q8IVM0 306 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 PDILTQ8N807 584 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 ZBTB38Q8NAP3 1195 aaPredicted RBP10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 OR8K1Q8NGG5 319 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 TCEANC2Q96MN5 208 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 GDAP1L1Q96MZ0 367 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 SCLT1Q96NL6 688 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 IL1RAPL2Q9NP60 686 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 TFCP2L1Q9NZI6 479 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 TRMT112Q9UI30 125 aaKnown RBP10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 ZNF652Q9Y2D9 606 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 RREB1Q92766 1687 aa10.67□□□□□ -0.7
CTNNA1-243ENST00000540387 C4BP0C0L5 1744 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 KIF5CO60282 957 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 ME1P48163 572 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 NAP1L1P55209 391 aaKnown RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 ZNF569Q5MCW4 686 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 TBC1D9BQ66K14 1250 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 CYB5D1Q6P9G0 228 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 MICALCLQ6ZW33 695 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 RPUSD2Q8IZ73 545 aaKnown RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 TC2NQ8N9U0 490 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 PI4K2BQ8TCG2 481 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 SSH3Q8TE77 659 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 AKT1S1Q96B36 256 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 HOMER3Q9NSC5 361 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 TPX2Q9ULW0 747 aaKnown RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 MYO6Q9UM54 1294 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 MYH15Q9Y2K3 1946 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 A0A0U1RQJ8 604 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 CTAGE9A4FU28 777 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 PCCAP05165 728 aaPredicted RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 SSBP05455 408 aaKnown RBP eCLIP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 CCDC175P0C221 793 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 ADKP55263 362 aaKnown RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 AKAP17AQ02040 695 aaKnown RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 TBX2Q13207 712 aaPredicted RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 MTF1Q14872 753 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 WHAMMP3Q1A5X7 153 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 ATRIPQ8WXE1 791 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 RSRC1Q96IZ7 334 aaKnown RBP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 USP28Q96RU2 1077 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 BATF3Q9NR55 127 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 NUP188Q5SRE5 1749 aa10.66□□□□□ -0.7
CTNNA1-243ENST00000540387 USP42Q9H9J4 1324 aaKnown RBP10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 ZKSCAN1P17029 563 aaPredicted RBP10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 POLA2Q14181 598 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 NECTIN1Q15223 517 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 THEMIS2Q5TEJ8 643 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 MYSM1Q5VVJ2 828 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 CNTROBQ8N137 903 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 MRPS27Q92552 414 aaKnown RBP10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 PAGR1Q9BTK6 254 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 INTS13Q9NVM9 706 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 TAF1LQ8IZX4 1826 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 NEDD4P46934 1319 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 A0A1B0GVL5 298 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 PYGLP06737 847 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 FAM163BP0C2L3 166 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 BAG6P46379 1132 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 FOXO4P98177 505 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 LMBR1LQ6UX01 489 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 NFXL1Q6ZNB6 911 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 CCDC148Q8NFR7 591 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 SLC39A2Q9NP94 309 aa10.65□□□□□ -0.7
CTNNA1-243ENST00000540387 SLC8A1P32418 973 aa10.64□□□□□ -0.71
CTNNA1-243ENST00000540387 PDCLQ13371 301 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms