RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TRIM47Q96LD4 638 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 EXOC1Q9NV70 894 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 STRCP1A6NGW2 1772 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 USP17L3A6NCW0 530 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 USP17L4A6NCW7 530 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 SLFN14P0C7P3 912 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 USP17L1Q7RTZ2 530 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PLIN2Q99541 437 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 MAN1B1Q9UKM7 699 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.19□□□□□ -0.461e-6■■■■□ 20.3
CLIP1-213ENST00000540338 SYNRGQ9UMZ2 1314 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PPEF1O14829 653 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-213ENST00000540338 EIF6P56537 245 aaKnown RBP12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PRR5LQ6MZQ0 368 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 GPCPD1Q9NPB8 672 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 FAM217BQ9NTX9 383 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-213ENST00000540338 USP40Q9NVE5 1235 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PCDHA4Q9UN74 947 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 SMCO2A6NFE2 343 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 UBE2Q2LH0YL09 131 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 AP5Z1O43299 807 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 GPSM2P81274 684 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PFKFB3Q16875 520 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-213ENST00000540338 C12orf60Q5U649 245 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 UBXN4Q92575 508 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 CASQ1P31415 396 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PDE6BP35913 854 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 PTPAQ15257 358 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 GRAMD1CQ8IYS0 662 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 BAG1Q99933 345 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-213ENST00000540338 SPTLC3Q9NUV7 552 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 DNAI1Q9UI46 699 aa12.19□□□□□ -0.46
CLIP1-213ENST00000540338 CCNT1O60563 726 aaKnown RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 IDEP14735 1019 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 ASIC1P78348 528 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 SEC23AQ15436 765 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 INF2Q27J81 1249 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 EPSTI1Q96J88 318 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 GSDMAQ96QA5 445 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 ZHX3Q9H4I2 956 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 FBXO2Q9UK22 296 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 WTIPA6NIX2 430 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 APBA3O96018 575 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 ERCC5P28715 1186 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 LONP1P36776 959 aaKnown RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 TNNI2P48788 182 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 SLC27A3Q5K4L6 730 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 JAKMIP3Q5VZ66 844 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 BLZF1Q9H2G9 400 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 CTNND2Q9UQB3 1225 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 MROH7-TTC4A0A0A0MT08 1334 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 PRKCSHP14314 528 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 CDK8P49336 464 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 GNG11P61952 73 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 CCDC144BQ3MJ40 725 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 SRBD1Q8N5C6 995 aaKnown RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 LRRC27Q9C0I9 530 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 KCNF1Q9H3M0 494 aa12.18□□□□□ -0.46
CLIP1-213ENST00000540338 CTDP1Q9Y5B0 961 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-213ENST00000540338 KIF5CO60282 957 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 TROAPQ12815 778 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 FKBP15Q5T1M5 1219 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 SPECC1LQ69YQ0 1117 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 FLAD1Q8NFF5 587 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 TEKT1Q969V4 418 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 PHF20Q9BVI0 1012 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 FGFR1OPO95684 399 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 ATP1A3P13637 1013 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 ZNF76P36508 570 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 MTIF2P46199 727 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 DOK7Q18PE1 504 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 SYT10Q6XYQ8 523 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 FAM114A1Q8IWE2 563 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 REXO1Q8N1G1 1221 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 ENOX1Q8TC92 643 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 RASGRP4Q8TDF6 673 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 GTPBP4Q9BZE4 634 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 BCL2L12Q9HB09 334 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 PDS5AQ29RF7 1337 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 SPEF2Q9C093 1822 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 AKR1B15C9JRZ8 316 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 EPS15P42566 896 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 MRPL12P52815 198 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 PAK1Q13153 545 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 TXNRD3Q86VQ6 643 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 FNBP4Q8N3X1 1017 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 MAP3K14Q99558 947 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 SH3GLB2Q9NR46 395 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 CGNQ9P2M7 1197 aaKnown RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 TUBE1Q9UJT0 475 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 GTPBP6O43824 516 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-213ENST00000540338 ARID5BQ14865 1188 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 SPATA1Q5VX52 437 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 IGSF22Q8N9C0 903 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 SLC44A5Q8NCS7 719 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 TANGO6Q9C0B7 1094 aa12.17□□□□□ -0.46
CLIP1-213ENST00000540338 ARHGAP6O43182 974 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 SLU7O95391 586 aaKnown RBP12.16□□□□□ -0.46
CLIP1-213ENST00000540338 KRT79Q5XKE5 535 aa12.16□□□□□ -0.46
CLIP1-213ENST00000540338 METTL16Q86W50 562 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms