RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 SASS6Q6UVJ0 657 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 PODNQ7Z5L7 613 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 FMR1NBQ8N0W7 255 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-212ENST00000540304 CNKSR1Q969H4 720 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 SH3BP1Q9Y3L3 701 aa11.1□□□□□ -0.63
CLIP1-212ENST00000540304 ADAMTSL1Q8N6G6 1762 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 CDK8P49336 464 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 RILPL1Q5EBL4 403 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 SRBD1Q8N5C6 995 aaKnown RBP11.09□□□□□ -0.63
CLIP1-212ENST00000540304 PNMA1Q8ND90 353 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 GEMIN8Q9NWZ8 242 aaKnown RBP11.09□□□□□ -0.63
CLIP1-212ENST00000540304 A0A1B0GVL5 298 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 USP17L3A6NCW0 530 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 USP17L4A6NCW7 530 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 CMA1P23946 247 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 NDUFA8P51970 172 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 USP17L1Q7RTZ2 530 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 FAM200AQ8TCP9 573 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 PHF20Q9BVI0 1012 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.09□□□□□ -0.63
CLIP1-212ENST00000540304 VPS54Q9P1Q0 977 aa11.09□□□□□ -0.63
CLIP1-212ENST00000540304 ZNF646O15015 1829 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-212ENST00000540304 MYH8P13535 1937 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 A0A087WWV3 80 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 LOC102724159A0A0B4J2E5 919 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 WDHD1O75717 1129 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-212ENST00000540304 MARCKSP29966 332 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-212ENST00000540304 CHRNA5P30532 468 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 SEMA3FQ13275 785 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 PWP2Q15269 919 aaKnown RBP11.08□□□□□ -0.64
CLIP1-212ENST00000540304 HHIPL2Q6UWX4 724 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 SHISA4Q96DD7 197 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 MXD3Q9BW11 206 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 DBNDD1Q9H9R9 158 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 hCG_1642624A0A1W2PR95 340 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 KRT2P35908 639 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 TOB1P50616 345 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-212ENST00000540304 NR5A1Q13285 461 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 GRM4Q14833 912 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 ANO6Q4KMQ2 910 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 NEDD1Q8NHV4 660 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 OXER1Q8TDS5 423 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 ZNF526Q8TF50 670 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-212ENST00000540304 TEKT1Q969V4 418 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 BRMS1Q9HCU9 246 aa11.08□□□□□ -0.64
CLIP1-212ENST00000540304 CAVIN2O95810 425 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 SCG2P13521 617 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 GNAQP50148 359 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 FKBP1AP62942 108 aaKnown RBP11.07□□□□□ -0.64
CLIP1-212ENST00000540304 HS1BP3Q53T59 392 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 ERCC4Q92889 916 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-212ENST00000540304 RNF39Q9H2S5 420 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 USP25Q9UHP3 1055 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 SCN9AQ15858 1988 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 CUTAO60888 179 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 PFKFB1P16118 471 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 SCNN1DP51172 638 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 TERF1P54274 439 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 CBX1P83916 185 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 PICALMQ13492 652 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 PFKFB3Q16875 520 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-212ENST00000540304 STRIP1Q5VSL9 837 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 TMEM47Q9BQJ4 181 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 YY1AP1Q9H869 796 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 USP40Q9NVE5 1235 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 STX8Q9UNK0 236 aa11.07□□□□□ -0.64
CLIP1-212ENST00000540304 ECE2O60344 883 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 OFD1O75665 1012 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 BAG6P46379 1132 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 SF3B2Q13435 895 aaKnown RBP11.06□□□□□ -0.64
CLIP1-212ENST00000540304 CC2D2BQ6DHV5 1058 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 C7orf43Q8WVR3 580 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 PSMD1Q99460 953 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 SDF4Q9BRK5 362 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 ZNF219Q9P2Y4 722 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-212ENST00000540304 CEP131Q9UPN4 1083 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 PLIN4Q96Q06 1357 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 C10orf71Q711Q0 1435 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 FAM237AA0A1B0GTK4 181 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 ZNF202O95125 648 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 CRKP46108 304 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 STX1AQ16623 288 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 CDC42EP5Q6NZY7 148 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 SHC4Q6S5L8 630 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 KRI1Q8N9T8 703 aaKnown RBP11.06□□□□□ -0.64
CLIP1-212ENST00000540304 CABP5Q9NP86 173 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 MAD2L2Q9UI95 211 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 HPSEQ9Y251 543 aa11.06□□□□□ -0.64
CLIP1-212ENST00000540304 UQCRHLA0A096LP55 91 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 UQCRHP07919 91 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 GABPAQ06546 454 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 DACT2Q5SW24 774 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 RESP18Q5W5W9 173 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 APOBEC3HQ6NTF7 200 aaKnown RBP11.05□□□□□ -0.64
CLIP1-212ENST00000540304 STAG2Q8N3U4 1231 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 SUPT20HQ8NEM7 779 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 TIGD1Q96MW7 591 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 MRIQ9BWK5 157 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 TRIM34Q9BYJ4 488 aa11.05□□□□□ -0.64
CLIP1-212ENST00000540304 DNAJC25Q9H1X3 360 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms