RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 GMNCA6NCL1 334 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 FTCDO95954 541 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 SLC9C2Q5TAH2 1124 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 FCHSD1Q86WN1 690 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 IQUBQ8NA54 791 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 TTLL11Q8NHH1 800 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 NELFBQ8WX92 580 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 HMG20BQ9P0W2 317 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 TCOF1Q13428 1488 aaKnown RBP12.28□□□□□ -0.44
PBX1-212ENST00000540236 GSCP56915 257 aaPredicted RBP12.28□□□□□ -0.44
PBX1-212ENST00000540236 CWF19L2Q2TBE0 894 aaKnown RBP12.28□□□□□ -0.44
PBX1-212ENST00000540236 RAD9BQ6WBX8 426 aa12.28□□□□□ -0.44
PBX1-212ENST00000540236 EPN1Q9Y6I3 576 aaPredicted RBP12.28□□□□□ -0.44
PBX1-212ENST00000540236 FAM135BQ49AJ0 1406 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 CDKL5O76039 1030 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 EPHB4P54760 987 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 LRRC43Q8N309 656 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 CYTH2Q99418 400 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 UBAP1Q9NZ09 502 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 ERBB3P21860 1342 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 MBD5Q9P267 1494 aa12.27□□□□□ -0.44
PBX1-212ENST00000540236 TOB2Q14106 344 aaPredicted RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.27□□□□□ -0.45
PBX1-212ENST00000540236 SLC12A7Q9Y666 1083 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 FGFR1OPO95684 399 aaKnown RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 XBP1P17861 261 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 MAGOHP61326 146 aaKnown RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 CUL3Q13618 768 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 ISLR2Q6UXK2 745 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 GSDMBQ8TAX9 411 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 MAGOHBQ96A72 148 aaKnown RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 TLR7Q9NYK1 1049 aaKnown RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 CHPF2Q9P2E5 772 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 PACSIN2Q9UNF0 486 aaPredicted RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 TMA7Q9Y2S6 64 aaKnown RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 DNAJC6O75061 913 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 ERCC5P28715 1186 aaPredicted RBP12.27□□□□□ -0.45
PBX1-212ENST00000540236 ALDH3A1P30838 453 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 SCTRP47872 440 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 RASSF7Q02833 373 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 AIFM3Q96NN9 605 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 ZIM3Q96PE6 472 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 L1RE1Q9UN81 338 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 CEP131Q9UPN4 1083 aa12.27□□□□□ -0.45
PBX1-212ENST00000540236 DAAM2Q86T65 1068 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 NGDNQ8NEJ9 315 aaKnown RBP12.26□□□□□ -0.45
PBX1-212ENST00000540236 FAM207AQ9NSI2 230 aaPredicted RBP12.26□□□□□ -0.45
PBX1-212ENST00000540236 ADGRG1Q9Y653 693 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 STXBP3O00186 592 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 AFAP1Q8N556 730 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 ZNF213O14771 459 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 ZBTB16Q05516 673 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 TSGA10IPQ3SY00 556 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 WAPLQ7Z5K2 1190 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 KRI1Q8N9T8 703 aaKnown RBP12.26□□□□□ -0.45
PBX1-212ENST00000540236 IFIH1Q9BYX4 1025 aaKnown RBP12.26□□□□□ -0.45
PBX1-212ENST00000540236 KCNJ18B7U540 433 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 HMGB1P09429 215 aaKnown RBP12.26□□□□□ -0.45
PBX1-212ENST00000540236 MCM7P33993 719 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 SEPT6Q14141 434 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 KCNJ12Q14500 433 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 C2CD5Q86YS7 1000 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 TRIM42Q8IWZ5 723 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 TAF6LQ9Y6J9 622 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 ABCD1P33897 745 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 SPATA24Q86W54 205 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 AMOTL1Q8IY63 956 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 FAM53CQ9NYF3 392 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 ATP8A1Q9Y2Q0 1164 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 WDR7Q9Y4E6 1490 aa12.26□□□□□ -0.45
PBX1-212ENST00000540236 ATP4AP20648 1035 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 PDE4BQ07343 736 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 DHX9Q08211 1270 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 TBC1D8BQ0IIM8 1120 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 UIMC1Q96RL1 719 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 MYD88Q99836 296 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 PRMT1Q99873 361 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 GPHNQ9NQX3 736 aaPredicted RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 IDH1O75874 414 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 MDH1P40925 334 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 MCMDC2Q4G0Z9 681 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 DHX32Q7L7V1 743 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 ARHGAP5Q13017 1502 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 PTGISQ16647 500 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 RAB3IL1Q8TBN0 382 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 NLRC4Q9NPP4 1024 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 KCNK3O14649 394 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 CCDC92Q53HC0 331 aaPredicted RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 HAUS1Q96CS2 278 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 BTBD11A6QL63 1104 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 ATP2A2P16615 1042 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 TMEM67Q5HYA8 995 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 KIFC2Q96AC6 838 aa12.25□□□□□ -0.45
PBX1-212ENST00000540236 RAB3IPQ96QF0 476 aaPredicted RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 LUC7LQ9NQ29 371 aaKnown RBP12.25□□□□□ -0.45
PBX1-212ENST00000540236 TNNC1P63316 161 aa12.24□□□□□ -0.45
PBX1-212ENST00000540236 TTF1Q15361 905 aaPredicted RBP12.24□□□□□ -0.45
PBX1-212ENST00000540236 KIAA0753Q2KHM9 967 aa12.24□□□□□ -0.45
PBX1-212ENST00000540236 IFIT3O14879 490 aaKnown RBP12.24□□□□□ -0.45
PBX1-212ENST00000540236 LLGL1Q15334 1064 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms