RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ATP2B2Q01814 1243 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 NOGQ13253 232 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 VGLL4Q14135 290 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 PPP4R3BQ5MIZ7 849 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 APOA5Q6Q788 366 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 RAB11FIP4Q86YS3 637 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 TMX3Q96JJ7 454 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 MYL10Q9BUA6 226 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 KAT14Q9H8E8 782 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 SLC12A7Q9Y666 1083 aa22.16■■□□□ 1.14
TNFRSF1A-213ENST00000540022 PDIA3P30101 505 aaKnown RBP22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 CTCFP49711 727 aaPredicted RBP22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 ZNF654Q8IZM8 581 aa22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 LRRC47Q8N1G4 583 aaKnown RBP22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 MKL1Q969V6 931 aa22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 ZNF274Q96GC6 653 aaPredicted RBP22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 NAP1L2Q9ULW6 460 aaPredicted RBP22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 SNCAIPQ9Y6H5 919 aa22.15■■□□□ 1.14
TNFRSF1A-213ENST00000540022 MYH8P13535 1937 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 A0A1W2PRG0 241 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 PTPRAP18433 802 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ANKRD13AQ8IZ07 590 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 PNMA1Q8ND90 353 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ACER1Q8TDN7 264 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CNKSR2Q8WXI2 1034 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CCDC102AQ96A19 550 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ZSCAN31Q96LW9 406 aaPredicted RBP22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 PICK1Q9NRD5 415 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 HPS5Q9UPZ3 1129 aa22.14■■□□□ 1.13
TNFRSF1A-213ENST00000540022 GOLGA8BA8MQT2 603 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 USP17L5A8MUK1 530 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SLC10A3P09131 477 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 HSPA8P11142 646 aaKnown RBP22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 RXRAP19793 462 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 TROAPQ12815 778 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 STK3Q13188 491 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ELP3Q9H9T3 547 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CSADQ9Y600 493 aa22.13■■□□□ 1.13
TNFRSF1A-213ENST00000540022 OTOFQ9HC10 1997 aa22.12■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SYNE3Q6ZMZ3 975 aa22.12■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CATIPQ7Z7H3 387 aa22.12■■□□□ 1.13
TNFRSF1A-213ENST00000540022 MICU3Q86XE3 530 aa22.12■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ARHGEF10LQ9HCE6 1279 aa22.12■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CASP8AP2Q9UKL3 1982 aa22.12■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ZBTB43O43298 467 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 LBX1P52954 281 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ST3GAL1Q11201 340 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 BECN1Q14457 450 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 RASAL3Q86YV0 1011 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 NECAB1Q8N987 351 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 NUP133Q8WUM0 1156 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 BEGAINQ9BUH8 593 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 PRDM10Q9NQV6 1147 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 TMX2Q9Y320 296 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 PFKFB2O60825 505 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 DDAH1O94760 285 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CCT2P78371 535 aaKnown RBP22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 IFFO2Q5TF58 517 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 RASGRP2Q7LDG7 609 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CCDC144CPQ8IYA2 1237 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SLKQ9H2G2 1235 aaPredicted RBP22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SH2B1Q9NRF2 756 aaPredicted RBP22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 MTMR7Q9Y216 660 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 ZHX2Q9Y6X8 837 aa22.11■■□□□ 1.13
TNFRSF1A-213ENST00000540022 GJA5P36382 358 aa22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 METAP2P50579 478 aaKnown RBP eCLIP22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 RCAN1P53805 252 aa22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SCRN1Q12765 414 aa22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CHMP4CQ96CF2 233 aa22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 WDR18Q9BV38 432 aa22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 NCOA5Q9HCD5 579 aaKnown RBP22.1■■□□□ 1.13
TNFRSF1A-213ENST00000540022 GOLGA8AA7E2F4 631 aa22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 KIF23Q02241 960 aaPredicted RBP22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SLC10A4Q96EP9 437 aa22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 AS3MTQ9HBK9 375 aa22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 FAM217BQ9NTX9 383 aaPredicted RBP22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SYNPO2Q9UMS6 1093 aa22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 DOCK1Q14185 1865 aa22.09■■□□□ 1.13
TNFRSF1A-213ENST00000540022 F5H6K3 240 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CDC27P30260 824 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SLC4A3P48751 1232 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 KLRC3Q07444 240 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 MKRN3Q13064 507 aaKnown RBP22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SPP2Q13103 211 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 CCDC83Q8IWF9 413 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 FANCBQ8NB91 859 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 GTF3C6Q969F1 213 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 TSKSQ9UJT2 592 aa22.08■■□□□ 1.13
TNFRSF1A-213ENST00000540022 SPDYE5A6NIY4 337 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 UNCXA6NJT0 531 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CALM1P0DP23 149 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CALM2P0DP24 149 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CALM3P0DP25 149 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 PDHBP11177 359 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 CUL4AQ13619 759 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 ZYXQ15942 572 aaKnown RBP22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 KIAA1755Q5JYT7 1200 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 ERO1BQ86YB8 467 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 ZNF280CQ8ND82 737 aa22.07■■□□□ 1.12
TNFRSF1A-213ENST00000540022 GMCL1P1Q8NEA9 526 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms